meson-python is 0.16.0 now, which is incompatible with pyproject.toml
We can fix it by adding sed -i -e "s/,<0.16.0//g" pyproject.toml
to PKGBUILD.
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Package Details: python-numpy-mkl 1.26.4-3
Package Actions
Git Clone URL: | https://aur.archlinux.org/python-numpy-mkl.git (read-only, click to copy) |
---|---|
Package Base: | python-numpy-mkl |
Description: | Scientific tools for Python, compiled with Intel MKL |
Upstream URL: | https://numpy.org |
Keywords: | numpy |
Licenses: | BSD-3-Clause |
Conflicts: | python-numpy |
Provides: | python-numpy |
Submitter: | bred |
Maintainer: | petronny (AutoUpdateBot, carlosal1015) |
Last Packager: | carlosal1015 |
Votes: | 38 |
Popularity: | 0.000000 |
First Submitted: | 2012-08-25 16:55 (UTC) |
Last Updated: | 2024-05-09 12:19 (UTC) |
Dependencies (11)
- intel-oneapi-mkl (intel-oneapi-hpckitAUR, intel-oneapi-basekit)
- python (python37AUR, python311AUR, python310AUR)
- cython (cython-gitAUR, cython0) (make)
- gcc-fortran (gccrs-fortran-gitAUR, gcc11-fortranAUR, gcc-fortran-gitAUR, gcc-fortran-snapshotAUR) (make)
- meson-python (make)
- procps-ng (procps-ng-gitAUR, busybox-coreutilsAUR) (make)
- python-build (make)
- python-installer (python-installer-gitAUR) (make)
- python-setuptools (make)
- python-hypothesis (check)
- python-pytest (python-pytest7) (check)
Required by (1826)
- aider-chat (requires python-numpy)
- akhelper-git (requires python-numpy)
- alsa-control (requires python-numpy)
- amdfan (requires python-numpy)
- amdgpu-fan (requires python-numpy)
- amulet-map-editor (requires python-numpy)
- amulet-map-editor-git (requires python-numpy)
- apitrace-git (requires python-numpy)
- apsynsim (requires python-numpy) (make)
- archlinux-tweak-tool-git (requires python-numpy)
- ardupilot-copter-sitl (requires python-numpy)
- art-rawconverter-imageio (requires python-numpy)
- artemis3 (requires python-numpy)
- asammdf-git (requires python-numpy)
- asus-numberpad-driver-b7402-git (requires python-numpy)
- asus-numberpad-driver-b7402-non-unicode-git (requires python-numpy)
- asus-numberpad-driver-b7402-unicode-git (requires python-numpy)
- asus-numberpad-driver-e210ma-git (requires python-numpy)
- asus-numberpad-driver-e210ma-non-unicode-git (requires python-numpy)
- asus-numberpad-driver-e210ma-unicode-git (requires python-numpy)
- Show 1806 more...
Sources (1)
daizhirui commented on 2024-04-28 08:32 (UTC) (edited on 2024-04-28 08:32 (UTC) by daizhirui)
hel commented on 2023-12-16 23:56 (UTC)
intel-oneapi-mkl is mentioned as dependency but this package does not contain the required opt/intel/oneapi/setvars.sh, which is provided by intel-oneapi-basekit or intel-oneapi-common
daizhirui commented on 2023-10-08 11:41 (UTC) (edited on 2023-12-17 00:52 (UTC) by daizhirui)
Update:
to fix this issue, make sure /opt/intel/oneapi/mkl/latest/lib/intel64
is in LD_LIBRARY_PATH
.
I have the issue of loading MKL in a fresh new build.
Python 3.11.5 (main, Sep 2 2023, 14:16:33) [GCC 13.2.1 20230801] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import numpy
Traceback (most recent call last):
File "/usr/lib/python3.11/site-packages/numpy/core/__init__.py", line 24, in <module>
from . import multiarray
File "/usr/lib/python3.11/site-packages/numpy/core/multiarray.py", line 10, in <module>
from . import overrides
File "/usr/lib/python3.11/site-packages/numpy/core/overrides.py", line 8, in <module>
from numpy.core._multiarray_umath import (
ImportError: libmkl_intel_lp64.so.2: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.11/site-packages/numpy/__init__.py", line 130, in <module>
from numpy.__config__ import show as show_config
File "/usr/lib/python3.11/site-packages/numpy/__config__.py", line 4, in <module>
from numpy.core._multiarray_umath import (
File "/usr/lib/python3.11/site-packages/numpy/core/__init__.py", line 50, in <module>
raise ImportError(msg)
ImportError:
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy C-extensions failed. This error can happen for
many reasons, often due to issues with your setup or how NumPy was
installed.
We have compiled some common reasons and troubleshooting tips at:
https://numpy.org/devdocs/user/troubleshooting-importerror.html
Please note and check the following:
* The Python version is: Python3.11 from "/usr/bin/python"
* The NumPy version is: "1.26.0"
and make sure that they are the versions you expect.
Please carefully study the documentation linked above for further help.
Original error was: libmkl_intel_lp64.so.2: cannot open shared object file: No such file or directory
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/lib/python3.11/site-packages/numpy/__init__.py", line 135, in <module>
raise ImportError(msg) from e
ImportError: Error importing numpy: you should not try to import numpy from
its source directory; please exit the numpy source tree, and relaunch
your python interpreter from there.
MartinDiehl commented on 2023-09-26 22:34 (UTC)
would it be possible to update the build instructions to those in the regular numpy package? There is a recent update that solves an issue with python-statsmodels and it does not rely on setup.py
petronny commented on 2023-08-21 11:34 (UTC)
I'm not sure if this is the cause to the difference but extra-x86_64-build
will call makechrootpkg
using configurations under /usr/share/devtools
.
kbipinkumar commented on 2023-08-21 10:40 (UTC)
@petronny thanks for the response. is there any difference between building with makechrootpkg -c -r $CHROOT
and extra-x86_64-build
? becase thats the only thing that i am doing differently.
petronny commented on 2023-08-21 06:31 (UTC)
MKL detection works fine in a fresh new build with extra-x86_64-build
and https://github.com/arch4edu/cactus/actions/runs/5721640576/job/15503541160 .
INFO: blas_mkl_info:
INFO: FOUND:
INFO: libraries = ['mkl_rt', 'pthread']
INFO: library_dirs = ['/opt/intel/oneapi/mkl/2023.1.0/lib/intel64']
INFO: define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
INFO: include_dirs = ['/opt/intel/oneapi/mkl/2023.1.0', '/opt/intel/oneapi/mkl/2023.1.0/include', '/opt/intel/oneapi/mkl/2023.1.0/lib']
INFO:
INFO: FOUND:
INFO: libraries = ['mkl_rt', 'pthread']
INFO: library_dirs = ['/opt/intel/oneapi/mkl/2023.1.0/lib/intel64']
INFO: define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
INFO: include_dirs = ['/opt/intel/oneapi/mkl/2023.1.0', '/opt/intel/oneapi/mkl/2023.1.0/include', '/opt/intel/oneapi/mkl/2023.1.0/lib']
INFO:
non-existing path in 'numpy/distutils': 'site.cfg'
INFO: lapack_opt_info:
INFO: lapack_armpl_info:
INFO: libraries armpl_lp64_mp not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: lapack_mkl_info:
INFO: FOUND:
INFO: libraries = ['mkl_rt', 'pthread']
INFO: library_dirs = ['/opt/intel/oneapi/mkl/2023.1.0/lib/intel64']
INFO: define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
INFO: include_dirs = ['/opt/intel/oneapi/mkl/2023.1.0', '/opt/intel/oneapi/mkl/2023.1.0/include', '/opt/intel/oneapi/mkl/2023.1.0/lib']
INFO:
INFO: FOUND:
INFO: libraries = ['mkl_rt', 'pthread']
INFO: library_dirs = ['/opt/intel/oneapi/mkl/2023.1.0/lib/intel64']
INFO: define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
INFO: include_dirs = ['/opt/intel/oneapi/mkl/2023.1.0', '/opt/intel/oneapi/mkl/2023.1.0/include', '/opt/intel/oneapi/mkl/2023.1.0/lib']
INFO:
Warning: attempted relative import with no known parent package
kbipinkumar commented on 2023-08-20 18:05 (UTC) (edited on 2023-08-20 18:08 (UTC) by kbipinkumar)
while building package in clean chroot with this PKGBUILD i am getting following output in build log. it seems mkl libraries despite being installed is not detected. complete log can be seen here
Cythonizing sources
INFO: blas_opt_info:
INFO: blas_armpl_info:
INFO: customize UnixCCompiler
INFO: libraries armpl_lp64_mp not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: blas_mkl_info:
/build/python-numpy-mkl/src/numpy-1.25.2/numpy/distutils/system_info.py:934: UserWarning: Specified path /opt/intel/oneapi/mkl/2023.1.0/lib/32 is invalid.
return self.get_paths(self.section, key)
INFO: libraries mkl_rt not found in ['/opt/intel/oneapi/mkl/2023.1.0', '/opt/intel/oneapi/mkl/2023.1.0/include', '/opt/intel/oneapi/mkl/2023.1.0/lib']
INFO: NOT AVAILABLE
INFO:
INFO: blas_ssl2_info:
INFO: libraries fjlapackexsve not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: blis_info:
INFO: libraries blis not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: openblas_info:
INFO: libraries openblas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: accelerate_info:
INFO: NOT AVAILABLE
INFO:
INFO: atlas_3_10_blas_threads_info:
INFO: Setting PTATLAS=ATLAS
INFO: libraries tatlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: atlas_3_10_blas_info:
INFO: libraries satlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: atlas_blas_threads_info:
INFO: Setting PTATLAS=ATLAS
INFO: libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: atlas_blas_info:
INFO: libraries f77blas,cblas,atlas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
/build/python-numpy-mkl/src/numpy-1.25.2/numpy/distutils/system_info.py:2154: UserWarning:
Optimized (vendor) Blas libraries are not found.
Falls back to netlib Blas library which has worse performance.
A better performance should be easily gained by switching
Blas library.
if self._calc_info(blas):
INFO: blas_info:
INFO: libraries blas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
/build/python-numpy-mkl/src/numpy-1.25.2/numpy/distutils/system_info.py:2154: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
if self._calc_info(blas):
INFO: blas_src_info:
INFO: NOT AVAILABLE
INFO:
/build/python-numpy-mkl/src/numpy-1.25.2/numpy/distutils/system_info.py:2154: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
if self._calc_info(blas):
INFO: NOT AVAILABLE
INFO:
non-existing path in 'numpy/distutils': 'site.cfg'
INFO: lapack_opt_info:
INFO: lapack_armpl_info:
INFO: libraries armpl_lp64_mp not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: lapack_mkl_info:
/build/python-numpy-mkl/src/numpy-1.25.2/numpy/distutils/system_info.py:934: UserWarning: Specified path /opt/intel/oneapi/mkl/2023.1.0/lib/32 is invalid.
return self.get_paths(self.section, key)
INFO: libraries mkl_rt not found in ['/opt/intel/oneapi/mkl/2023.1.0', '/opt/intel/oneapi/mkl/2023.1.0/include', '/opt/intel/oneapi/mkl/2023.1.0/lib']
INFO: NOT AVAILABLE
INFO:
INFO: lapack_ssl2_info:
INFO: libraries fjlapackexsve not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: openblas_lapack_info:
INFO: libraries openblas not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: openblas_clapack_info:
INFO: libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: flame_info:
INFO: libraries flame not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
INFO: atlas_3_10_threads_info:
INFO: Setting PTATLAS=ATLAS
INFO: libraries tatlas,tatlas not found in /usr/local/lib
INFO: libraries tatlas,tatlas not found in /usr/lib64
INFO: libraries tatlas,tatlas not found in /usr/lib
INFO: libraries tatlas,tatlas not found in /usr/lib/
INFO: <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
INFO: NOT AVAILABLE
INFO:
INFO: atlas_3_10_info:
INFO: libraries satlas,satlas not found in /usr/local/lib
INFO: libraries satlas,satlas not found in /usr/lib64
INFO: libraries satlas,satlas not found in /usr/lib
INFO: libraries satlas,satlas not found in /usr/lib/
INFO: <class 'numpy.distutils.system_info.atlas_3_10_info'>
INFO: NOT AVAILABLE
INFO:
INFO: atlas_threads_info:
INFO: Setting PTATLAS=ATLAS
INFO: libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
INFO: libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
INFO: libraries ptf77blas,ptcblas,atlas not found in /usr/lib
INFO: libraries ptf77blas,ptcblas,atlas not found in /usr/lib/
INFO: <class 'numpy.distutils.system_info.atlas_threads_info'>
INFO: NOT AVAILABLE
INFO:
INFO: atlas_info:
INFO: libraries f77blas,cblas,atlas not found in /usr/local/lib
INFO: libraries f77blas,cblas,atlas not found in /usr/lib64
INFO: libraries f77blas,cblas,atlas not found in /usr/lib
INFO: libraries f77blas,cblas,atlas not found in /usr/lib/
INFO: <class 'numpy.distutils.system_info.atlas_info'>
INFO: NOT AVAILABLE
INFO:
INFO: lapack_info:
INFO: libraries lapack not found in ['/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
INFO: NOT AVAILABLE
INFO:
/build/python-numpy-mkl/src/numpy-1.25.2/numpy/distutils/system_info.py:1972: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
return getattr(self, '_calc_info_{}'.format(name))()
INFO: lapack_src_info:
INFO: NOT AVAILABLE
petronny commented on 2022-09-28 08:28 (UTC)
Prebuilt binaries of this package can be found in arch4edu.
4rozenwolves commented on 2022-04-08 12:14 (UTC) (edited on 2022-04-08 12:15 (UTC) by 4rozenwolves)
I made an updated python-numpy-mkl and python-scipy-mkl that uses intel-oneapi-mkl.
Be sure to install the updated oneapi
packages from https://github.com/huyz-git/intel-oneapi-aur since the current intel-oneapi-mkl
cannot be installed with packages from AUR
.
Pinned Comments
petronny commented on 2022-09-28 08:28 (UTC)
Prebuilt binaries of this package can be found in arch4edu.