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| author | PolpOnline | 2021-06-22 21:25:01 +0200 |
|---|---|---|
| committer | PolpOnline | 2021-06-22 21:25:01 +0200 |
| commit | d8c3fd250a8aa262bb5935d5f235d8af863cc3b3 (patch) | |
| tree | af19fd2877d192744bb26fae8a83447cfe89014c | |
| parent | 57b97a040f69be2e946dcfffd07a6c764804f8ec (diff) | |
| download | aur-d8c3fd250a8aa262bb5935d5f235d8af863cc3b3.tar.gz | |
fix: Updated dependencies and updated build() function
| -rw-r--r-- | .SRCINFO | 5 | ||||
| -rw-r--r-- | PKGBUILD | 8 |
2 files changed, 12 insertions, 1 deletions
@@ -6,11 +6,16 @@ pkgbase = abyss arch = i686 arch = x86_64 license = GPL3 + makedepends = automake + makedepends = autoconf makedepends = boost makedepends = sparsehash depends = make depends = openmpi depends = sqlite + optdepends = pigz: for parallel gzip + optdepends = samtools: to read BAM files + optdepends = zsh: to report time and memory usage source = abyss-2.3.1.tar.gz::https://github.com/bcgsc/abyss/archive/2.3.1.tar.gz sha512sums = c7fb8b0a1a1346d138a0a64d2a2886b7c081ed628011b614e8ff14d1cbf4a992a8acb1cc668640c0c6a9c22802e4b0cb839f136b8e1f12fe76dae3248cec1777 @@ -9,13 +9,19 @@ arch=("i686" "x86_64") url="https://github.com/bcgsc/abyss" license=("GPL3") depends=("make" "openmpi" "sqlite") -makedepends=("boost" "sparsehash") +makedepends=("automake" "autoconf" "boost" "sparsehash") +optdepends=( + 'pigz: for parallel gzip' + 'samtools: to read BAM files' + 'zsh: to report time and memory usage' +) source=("$pkgname-$pkgver.tar.gz::https://github.com/bcgsc/abyss/archive/$pkgver.tar.gz") sha512sums=('c7fb8b0a1a1346d138a0a64d2a2886b7c081ed628011b614e8ff14d1cbf4a992a8acb1cc668640c0c6a9c22802e4b0cb839f136b8e1f12fe76dae3248cec1777') build() { cd "${pkgname}-${pkgver}" + ./autogen.sh LDFLAGS="${LDFLAGS:-} -L/usr/lib/openmpi" \ ./configure --prefix=/usr --disable-werror make |