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| author | Kuoi | 2023-05-14 22:30:08 +0800 |
|---|---|---|
| committer | Kuoi | 2023-05-14 22:30:08 +0800 |
| commit | db27f03337ca367fdab7d8bbff9c1c9519b46da7 (patch) | |
| tree | fcba6d6e2561784fc427a5955f8f2e6183296c48 | |
| parent | fb534ed6b784d1e16cf89b497d9611775f974621 (diff) | |
| download | aur-db27f03337ca367fdab7d8bbff9c1c9519b46da7.tar.gz | |
2.3.6: fix and format
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | PKGBUILD | 22 |
2 files changed, 11 insertions, 19 deletions
@@ -8,12 +8,12 @@ pkgbase = abyss license = GPL3 makedepends = boost makedepends = sparsehash - depends = make + makedepends = make + makedepends = btllib depends = openmpi - depends = sqlite + depends = make optdepends = pigz: for parallel gzip - optdepends = samtools: to read BAM files - optdepends = zsh: to report time and memory usage + optdepends = samtools: for reading SAM files source = abyss-2.3.6.tar.gz::https://github.com/bcgsc/abyss/archive/2.3.6.tar.gz sha512sums = bc535f2676f6ed9929219680fb301787bffa527892c46f96c10d4e998cd7a7cf88df689f04e3bb4333d4a8ec7f098f6bd45b1a0e20877674d003c7f57eca5268 @@ -1,4 +1,5 @@ -# Maintainer: PolpOnline <aur at t0mmy dot anonaddy dot com> +# Maintainer: Guoyi ZHang <myname at malacology dot net> +# Contributor: PolpOnline <aur at t0mmy dot anonaddy dot com> # Contributor: Eric Biggers <ebiggers3 at gmail dot com> pkgname=abyss @@ -8,29 +9,20 @@ pkgdesc="Assembly By Short Sequences - a de novo, parallel, paired-end sequence arch=("i686" "x86_64") url="https://github.com/bcgsc/abyss" license=("GPL3") -depends=("make" "openmpi" "sqlite") -makedepends=("boost" "sparsehash") +depends=("openmpi" "make") +makedepends=("boost" "sparsehash" "make" "btllib") optdepends=( 'pigz: for parallel gzip' - 'samtools: to read BAM files' - 'zsh: to report time and memory usage' + 'samtools: for reading SAM files' ) source=("$pkgname-$pkgver.tar.gz::https://github.com/bcgsc/abyss/archive/$pkgver.tar.gz") sha512sums=('bc535f2676f6ed9929219680fb301787bffa527892c46f96c10d4e998cd7a7cf88df689f04e3bb4333d4a8ec7f098f6bd45b1a0e20877674d003c7f57eca5268') build() { cd "${pkgname}-${pkgver}" - ./autogen.sh - LDFLAGS="${LDFLAGS:-} -L/usr/lib/openmpi" \ - ./configure --prefix=/usr --disable-werror - make -} - -check() { - cd "${pkgname}-${pkgver}" - - make check + ./configure --prefix=/usr --with-boost=/usr/lib --with-mpi=/usr/lib/openmpi --with-sparsehash=/usr/lib --with-btllib=/usr/lib --without-sqlite --disable-werror + make } package() { |