diff options
| author | BioArchLinuxBot | 2022-12-17 04:49:51 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2022-12-17 04:49:51 +0000 |
| commit | 9a07db70dfe2ee8f2d4d389311a28e614a8eb321 (patch) | |
| tree | 6e4c77b3e635828a869ceb9fd1cbf6a10c45f547 | |
| parent | 7714fdb1d5114e24a629a49fff8907a550ac502a (diff) | |
| download | aur-9a07db70dfe2ee8f2d4d389311a28e614a8eb321.tar.gz | |
[lilac] updated to 1.0.0-3
| -rw-r--r-- | .SRCINFO | 16 | ||||
| -rw-r--r--[-rwxr-xr-x] | PKGBUILD | 28 |
2 files changed, 31 insertions, 13 deletions
@@ -1,22 +1,24 @@ pkgbase = agat - pkgdesc = Another Gtf/Gff Analysis Toolkit: Suite of tools to handle gene annotations in any GTF/GFF format. https://www.doi.org/10.5281/zenodo.3552717 + pkgdesc = Another Gtf/Gff Analysis Toolkit is a suite of tools to handle gene annotations in GTF/GFF format. doi:10.5281/zenodo.3552717 pkgver = 1.0.0 - pkgrel = 1 + pkgrel = 3 url = https://github.com/NBISweden/AGAT arch = any license = GPL3 depends = perl-bioperl - depends = perl-clone depends = perl-carp-clan - depends = perl-sort-naturally - depends = perl-yaml-libyaml - depends = perl-lwp-protocol-https + depends = perl-clone + depends = perl-file-share depends = perl-file-sharedir depends = perl-file-sharedir-install depends = perl-graph + depends = perl-lwp-protocol-https depends = perl-lwp-useragent-determined depends = perl-moose - depends = perl-file-share + depends = perl-sort-naturally + depends = perl-yaml-libyaml + options = !emptydirs + options = purge source = agat-1.0.0.tar.gz::https://github.com/NBISweden/AGAT/archive/refs/tags/v1.0.0.tar.gz sha512sums = 937b03f5f76afe0a190760046ab05f3c91b7a4582d2cde0053479659e7da460221d7051bd307e06239e5b5786f050eb7492ca4cc8744f022254ab9e3eb49c45a diff --git a/PKGBUILD b/PKGBUILD index 9a33f62a20e3..cb2f4f42ae21 100755..100644 --- a/PKGBUILD +++ b/PKGBUILD @@ -3,29 +3,45 @@ pkgname=agat _pkgname=AGAT pkgver=1.0.0 -pkgrel=1 -pkgdesc="Another Gtf/Gff Analysis Toolkit: Suite of tools to handle gene annotations in any GTF/GFF format. https://www.doi.org/10.5281/zenodo.3552717" +pkgrel=3 +pkgdesc="Another Gtf/Gff Analysis Toolkit is a suite of tools to handle gene annotations in GTF/GFF format. doi:10.5281/zenodo.3552717" arch=('any') -license=('GPL3') -depends=('perl-bioperl' 'perl-clone' 'perl-carp-clan' 'perl-sort-naturally' 'perl-yaml-libyaml' 'perl-lwp-protocol-https' 'perl-file-sharedir' 'perl-file-sharedir-install' 'perl-graph' 'perl-lwp-useragent-determined' 'perl-moose' 'perl-file-share') url='https://github.com/NBISweden/AGAT' +license=('GPL3') +depends=( + 'perl-bioperl' + 'perl-carp-clan' + 'perl-clone' + 'perl-file-share' + 'perl-file-sharedir' + 'perl-file-sharedir-install' + 'perl-graph' + 'perl-lwp-protocol-https' + 'perl-lwp-useragent-determined' + 'perl-moose' + 'perl-sort-naturally' + 'perl-yaml-libyaml' + ) source=($pkgname-$pkgver.tar.gz::https://github.com/NBISweden/AGAT/archive/refs/tags/v$pkgver.tar.gz) sha512sums=('937b03f5f76afe0a190760046ab05f3c91b7a4582d2cde0053479659e7da460221d7051bd307e06239e5b5786f050eb7492ca4cc8744f022254ab9e3eb49c45a') +options=('!emptydirs' 'purge') prepare() { - cd $_pkgname-$pkgver + cd $_pkgname-$pkgver sed -i '51d' Makefile.PL #remove unneeded json dependency from makefile } build() { cd $_pkgname-$pkgver perl Makefile.PL INSTALLDIRS=vendor + make PREFIX="$pkgdir"/usr INSTALLDIR=${pkgdir}/usr/bin } package() { cd $_pkgname-$pkgver - install -d "$pkgdir"/usr/bin/vendor_perl + install -dm755 "$pkgdir"/usr/bin/vendor_perl + make install DESTDIR="$pkgdir" find "$pkgdir" \( -name .packlist -o -name perllocal.pod \) -delete } |