artemis to 16.0.9

2 files changed, 21 insertions, 25 deletions

diff --git a/.SRCINFO b/.SRCINFO
index b643a2db4366..0ea4a7c84c7e 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,16 +1,13 @@
 pkgbase = artemis
-	pkgdesc = Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation.
-	pkgver = 16.0.0
+	pkgdesc = A free genome viewer and annotation tool that allows visualization of biological sequence features
+	pkgver = 16.0.9
 	pkgrel = 1
 	url = http://www.sanger.ac.uk/resources/software/
-	arch = i686
 	arch = x86_64
 	license = GPL2
 	depends = java-runtime>=1.6
-	provides = artemis
-	conflicts = artemis
-	source = ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.tar.gz
-	md5sums = bf6d9d9df113b8676857e3eb3dedd990
+	source = artemis-16.0.9.tar.gz::ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.tar.gz
+	sha256sums = 84a79eef8887994facb786ed095400ca5d7ddbfb1b126b2f3906db3dc1775813
 
 pkgname = artemis
 
diff --git a/PKGBUILD b/PKGBUILD
index 77b7489644b2..d23ec9d216e2 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,32 +1,31 @@
 # Maintainer: Clint Valentine <valentine.clint@gmail.com>
 
 pkgname='artemis'
-pkgver='16.0.0'
+pkgver=16.0.9
 pkgrel=1
-pkgdesc='Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation.'
-arch=('i686' 'x86_64')
+pkgdesc='A free genome viewer and annotation tool that allows visualization of biological sequence features'
+arch=('x86_64')
 url=http://www.sanger.ac.uk/resources/software/"${artemis}"
 license=('GPL2')
 depends=('java-runtime>=1.6')
-provides=('artemis')
-conflicts=('artemis')
-source=(ftp://ftp.sanger.ac.uk/pub/resources/software/"${pkgname}"/"${pkgname}".tar.gz)
-md5sums=('bf6d9d9df113b8676857e3eb3dedd990')
+source=("${pkgname}"-"${pkgver}".tar.gz::ftp://ftp.sanger.ac.uk/pub/resources/software/"${pkgname}"/"${pkgname}".tar.gz)
+sha256sums=('84a79eef8887994facb786ed095400ca5d7ddbfb1b126b2f3906db3dc1775813')
 
 package() {
-    cd "${srcdir}"/"${pkgname}"
+  cd "${srcdir}"/"${pkgname}"
 
-    mkdir -p "${pkgdir}"/usr/bin
-    mkdir -p "${pkgdir}"/opt/"${pkgname}"/
+  sed -i 's#ARTEMIS_HOME=`dirname "$PRG"`/.#ARTEMIS_HOME=/opt/artemis/#' art
+  sed -i 's#ACT_HOME=`dirname "$PRG"`/.#ACT_HOME=/opt/artemis/#' act
+  sed -i 's#ARTEMIS_HOME=`dirname "$PRG"`/.#ARTEMIS_HOME=/opt/artemis/#' dnaplotter
 
-    cp -a * "${pkgdir}"/opt/"${pkgname}"/
+  mkdir -p "${pkgdir}"/opt/"${pkgname}"/
+  cp -a * "${pkgdir}"/opt/"${pkgname}"/
 
-    scripts=('act' 'art' 'dnaplotter')
+  scripts=('act' 'art' 'dnaplotter')
+  for script in "${scripts[@]}"; do
+    install -Dm775 "${script}" "${pkgdir}"/usr/bin/"${script}"
+    rm "${pkgdir}"/opt/"${pkgname}"/"${script}"
+  done
 
-    for script in "${scripts[@]}"
-    do
-        ln -s "${pkgdir}"/opt/artemis/"${script}" "${pkgdir}"/usr/bin/"${script}"
-    done
-
-    install -Dm644 README "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE
+  install -Dm644 README "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE
 }