diff options
| author | Sukanka | 2022-06-07 21:33:44 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-07 21:33:44 +0800 |
| commit | 4b84dc62ab710f58555370b7f3c57423fb6ae419 (patch) | |
| tree | b5f72269c44332a6b3da14dfc488e7eb743e5507 | |
| parent | f1cee8b496a21ac3c2ede39661fd8b9e0a14e7ce (diff) | |
| download | aur-4b84dc62ab710f58555370b7f3c57423fb6ae419.tar.gz | |
use java-runtime or java-environment
| -rw-r--r-- | .SRCINFO | 5 | ||||
| -rw-r--r-- | PKGBUILD | 13 |
2 files changed, 8 insertions, 10 deletions
@@ -1,12 +1,11 @@ pkgbase = bbmap pkgdesc = A short read aligner and other bioinformatic tools pkgver = 38.96 - pkgrel = 1 + pkgrel = 5 url = https://jgi.doe.gov/data-and-tools/bbtools/ arch = x86_64 license = BSD - depends = jre8-openjdk - depends = jdk8-openjdk + depends = java-environment optdepends = env-modules: for any scripts requiring `module` optdepends = pigz: for parallel GZIP (de)compression optdepends = samtools: for BAM output @@ -2,12 +2,12 @@ pkgname=bbmap pkgver=38.96 -pkgrel=1 +pkgrel=5 pkgdesc="A short read aligner and other bioinformatic tools" arch=('x86_64') url=https://jgi.doe.gov/data-and-tools/bbtools/ license=('BSD') -depends=('jre8-openjdk' 'jdk8-openjdk') +depends=('java-environment') optdepends=( 'env-modules: for any scripts requiring `module`' 'pigz: for parallel GZIP (de)compression' @@ -21,13 +21,12 @@ prepare() { make -f makefile.linux clean } -build() { - cd "${srcdir}"/"${pkgname}"/jni - # Headers for JNI are found in this Arch Linux specific location - env JAVA_HOME=/usr/lib/jvm/default make -f makefile.linux -} package() { + cd "${srcdir}"/"${pkgname}"/jni + archlinux-java fix + # Headers for JNI are found in this Arch Linux specific location + env JAVA_HOME=/usr/lib/jvm/default make -f makefile.linux cd "${srcdir}"/"${pkgname}" mkdir -p "${pkgdir}"/usr/share/doc/"${pkgname}"/ |