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authorAndrew O'Neill2017-11-18 15:48:59 -0500
committerAndrew O'Neill2017-11-18 15:48:59 -0500
commit314bd23101a994795764852702251224fe3b568f (patch)
tree37805cd7b5ba080c3f95e0cb72d6c710d9435221
parent69af6b423622887a9555db7adf6517c039a3cf13 (diff)
downloadaur-314bd23101a994795764852702251224fe3b568f.tar.gz
Version bump. Also removed previous previous preparations that are no longer necessary
-rw-r--r--.SRCINFO13
-rw-r--r--.gitignore1
-rw-r--r--PKGBUILD36
3 files changed, 15 insertions, 35 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 09ebedbd891..33f172692ab 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,8 +1,6 @@
-# Generated by mksrcinfo v8
-# Wed Jun 28 15:26:46 UTC 2017
pkgbase = bcftools
- pkgdesc = Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
- pkgver = 1.5
+ pkgdesc = A program for variant calling and manipulating files in the Variant Call Format (VCF) and its binary counterpart BCF
+ pkgver = 1.6
pkgrel = 1
url = http://samtools.github.io/bcftools/
arch = i686
@@ -10,9 +8,10 @@ pkgbase = bcftools
license = GPL
depends = gsl
depends = htslib
- optdepends = python2: needed for some scripts
- source = https://github.com/samtools/bcftools/releases/download/1.5/bcftools-1.5.tar.bz2
- md5sums = e43efe3df5f9c55acb4b48cee214d281
+ depends = python-matplotlib
+ depends = python
+ source = https://github.com/samtools/bcftools/releases/download/1.6/bcftools-1.6.tar.bz2
+ sha256sums = 293010736b076cf684d2873928924fcc3d2c231a091084c2ac23a8045c7df982
pkgname = bcftools
diff --git a/.gitignore b/.gitignore
deleted file mode 100644
index 42ab3cf03f2..00000000000
--- a/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-*.pkg.tar*
diff --git a/PKGBUILD b/PKGBUILD
index bb2e905bb39..8cc9bca957b 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,29 +1,19 @@
-# Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
+# Maintainer: Andrew O'Neill <andrew at meanjollies dot com>
+# Contributor: Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
pkgname=bcftools
-pkgver=1.5
+pkgver=1.6
pkgrel=1
-pkgdesc="Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants"
+pkgdesc="A program for variant calling and manipulating files in the Variant Call Format (VCF) and its binary counterpart BCF"
arch=('i686' 'x86_64')
url="http://samtools.github.io/bcftools/"
license=('GPL')
-depends=('gsl' 'htslib')
-optdepends=('python2: needed for some scripts')
-source=(https://github.com/samtools/bcftools/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2)
-
-prepare() {
- cd $srcdir/$pkgname-$pkgver
-
- # prevent shipped htslib to be used
- rm -rf htslib-$pkgver
-
- sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \
- -e 's|#!/usr/bin/python|#!/usr/bin/env python2|' \
- -i misc/plot-roh.py misc/guess-ploidy.py
-}
+depends=('gsl' 'htslib' 'python-matplotlib' 'python')
+source=(https://github.com/samtools/$pkgname/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2)
+sha256sums=('293010736b076cf684d2873928924fcc3d2c231a091084c2ac23a8045c7df982')
build() {
- cd $srcdir/$pkgname-$pkgver
+ cd $pkgname-$pkgver
./configure \
--prefix=/usr \
@@ -35,16 +25,8 @@ build() {
make
}
-check() {
- cd $srcdir/$pkgname-$pkgver
-
- make check
-}
-
package() {
- cd $srcdir/$pkgname-$pkgver
+ cd $pkgname-$pkgver
make DESTDIR=$pkgdir install
}
-
-md5sums=('e43efe3df5f9c55acb4b48cee214d281')