summarylogtreecommitdiffstats
diff options
context:
space:
mode:
authorclintval2018-01-17 23:17:57 -0800
committerclintval2018-01-17 23:17:57 -0800
commit7e3cae32b438ddf36616dd9aa6283522773cc219 (patch)
treeb4a2e9ddbaab40e2cd451d696258c8867af5e58e
parentb67944f0c285c5a3bfe92f8d1fa97f241d52c1b3 (diff)
downloadaur-7e3cae32b438ddf36616dd9aa6283522773cc219.tar.gz
biobambam to 2.0.83
-rw-r--r--.SRCINFO13
-rw-r--r--PKGBUILD27
2 files changed, 16 insertions, 24 deletions
diff --git a/.SRCINFO b/.SRCINFO
index c1f671307196..3cb4a686ba6a 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,16 +1,13 @@
pkgbase = biobambam
- pkgdesc = Bioinformatics BAM file pre-processing utilities
- pkgver = 2.0.79
+ pkgdesc = BAM file pre-processing utilities for bioinformatics.
+ pkgver = 2.0.83
pkgrel = 1
url = https://github.com/gt1/biobambam2
arch = x86_64
license = GPL3
- makedepends = gcc-libs
- depends = libmaus>=2.0
- provides = biobambam
- conflicts = biobambam
- source = https://github.com/gt1/biobambam2/archive/2.0.79-release-20171006114010.tar.gz
- md5sums = 534458a7b22e37bfd4b5b6e9c590553f
+ makedepends = libmaus
+ source = biobambam-2.0.83-20180105121132.tar.gz::https://github.com/gt1/biobambam2/archive/2.0.83-release-20180105121132.tar.gz
+ sha256sums = 28c751b899d5f2a4414ea0f36b43b91c129aea83447b93a0920875401c29ec35
pkgname = biobambam
diff --git a/PKGBUILD b/PKGBUILD
index e7e108c292ca..820632c6312c 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,34 +1,29 @@
# Maintainer: Clint Valentine <valentine.clint@gmail.com>
pkgname=biobambam
-pkgver=2.0.79
+pkgver=2.0.83
pkgrel=1
-release=20171006114010
-pkgdesc="Bioinformatics BAM file pre-processing utilities"
+_release=20180105121132
+pkgdesc="BAM file pre-processing utilities for bioinformatics."
arch=('x86_64')
url="https://github.com/gt1/biobambam2"
license=('GPL3')
-depends=('libmaus>=2.0')
-makedepends=('gcc-libs')
-provides=('biobambam')
-conflicts=('biobambam')
-source=("https://github.com/gt1/${pkgname}2/archive/${pkgver}-release-${release}.tar.gz")
-md5sums=('534458a7b22e37bfd4b5b6e9c590553f')
+makedepends=('libmaus')
+source=("${pkgname}"-"${pkgver}"-"${_release}".tar.gz::https://github.com/gt1/"${pkgname}"2/archive/"${pkgver}"-release-"${_release}".tar.gz)
+sha256sums=('28c751b899d5f2a4414ea0f36b43b91c129aea83447b93a0920875401c29ec35')
MAKEFLAGS="-j$(nproc)"
-build()
-{
- cd "${srcdir}/${pkgname}2-${pkgver}-release-${release}"
- ./configure \
- --prefix="${pkgdir}/usr"
+build() {
+ cd "${srcdir}"/"${pkgname}2"-"${pkgver}"-release-"${_release}"
+ ./configure --prefix="${pkgdir}"/usr
}
check() {
- cd "${srcdir}/${pkgname}2-${pkgver}-release-${release}"
+ cd "${srcdir}"/"${pkgname}2"-"${pkgver}"-release-"${_release}"
make test
}
package() {
- cd "${srcdir}/${pkgname}2-${pkgver}-release-${release}"
+ cd "${srcdir}"/"${pkgname}2"-"${pkgver}"-release-"${_release}"
make install
}