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| author | Christian Krause | 2016-01-05 22:23:41 +0100 |
|---|---|---|
| committer | Christian Krause | 2016-01-05 22:23:41 +0100 |
| commit | 8cd75658eca30ccbca3ac7ac76b7c7b48b3af7b2 (patch) | |
| tree | 6a79998fd56de8c60ecae7fe4a00d30d7bca6991 | |
| parent | 1c2796be5e1bbb41b62b194498132d25e8bdf5f1 (diff) | |
| download | aur-8cd75658eca30ccbca3ac7ac76b7c7b48b3af7b2.tar.gz | |
blast+-2.3.0-1
| -rw-r--r-- | .SRCINFO | 10 | ||||
| -rw-r--r-- | PKGBUILD | 17 | ||||
| -rw-r--r-- | typeinfo.patch | 11 |
3 files changed, 8 insertions, 30 deletions
@@ -1,6 +1,8 @@ +# Generated by mksrcinfo v8 +# Tue Jan 5 21:22:57 UTC 2016 pkgbase = blast+ pkgdesc = finds regions of similarity between biological sequences - pkgver = 2.2.31 + pkgver = 2.3.0 pkgrel = 1 url = http://blast.ncbi.nlm.nih.gov/ arch = i686 @@ -21,10 +23,8 @@ pkgbase = blast+ conflicts = cddlib conflicts = proj replaces = ncbi-blast - source = ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-src.tar.gz - source = typeinfo.patch - md5sums = f32bd2d2c66205c53c6981f94e1a0d54 - md5sums = 9c257a762ce4e7418e95a48723832a86 + source = ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.3.0/ncbi-blast-2.3.0+-src.tar.gz + md5sums = 0f252f0edf6c92e18012622fc93083b0 pkgname = blast+ @@ -1,7 +1,7 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=blast+ -pkgver=2.2.31 +pkgver=2.3.0 pkgrel=1 pkgdesc="finds regions of similarity between biological sequences" arch=('i686' 'x86_64') @@ -12,19 +12,8 @@ makedepends=('cpio') conflicts=('blast' 'blast+-bin' 'ncbi-blast' 'ncbi-blast+' 'cddlib' 'proj') provides=('blast' 'blast+-bin' 'ncbi-blast' 'ncbi-blast+') replaces=('ncbi-blast') -source=("ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz" - 'typeinfo.patch') -md5sums=('f32bd2d2c66205c53c6981f94e1a0d54' - '9c257a762ce4e7418e95a48723832a86') - -prepare() { - cd $srcdir/ncbi-blast-$pkgver+-src/c++ - - patch -p1 -i $srcdir/typeinfo.patch - - sed -e '/if test "$with_mt" != "no" ; then/i compiler=GCC' \ - -i src/build-system/configure -} +source=("ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz") +md5sums=('0f252f0edf6c92e18012622fc93083b0') build() { cd $srcdir/ncbi-blast-$pkgver+-src/c++ diff --git a/typeinfo.patch b/typeinfo.patch deleted file mode 100644 index 5962080b91a3..000000000000 --- a/typeinfo.patch +++ /dev/null @@ -1,11 +0,0 @@ -diff -aur c++/include/corelib/ncbistl.hpp c++.new/include/corelib/ncbistl.hpp ---- c++/include/corelib/ncbistl.hpp 2013-09-06 20:29:54.000000000 +0200 -+++ c++.new/include/corelib/ncbistl.hpp 2014-06-05 11:04:30.533234506 +0200 -@@ -37,6 +37,7 @@ - - #include <common/ncbi_export.h> - #include <string> -+#include <typeinfo> - - - // Get rid of some warnings in MSVC++ |