diff options
| author | Yishen Miao | 2023-06-19 13:25:21 -0700 |
|---|---|---|
| committer | Yishen Miao | 2023-06-19 13:26:38 -0700 |
| commit | c397c5d4bdbc3264b11696a99f4fa3e026370497 (patch) | |
| tree | f73d7c9d48f4c4e38d7fdfc834a3d874b9924915 | |
| parent | 28d7d1a62a74ddd3e114d7ef202284e4745c3efe (diff) | |
| download | aur-c397c5d4bdbc3264b11696a99f4fa3e026370497.tar.gz | |
Patching cstdint
Patches cstdint to compile with GCC 13.
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | PKGBUILD | 47 | ||||
| -rw-r--r-- | cstdint.patch | 12 |
3 files changed, 45 insertions, 22 deletions
@@ -1,14 +1,14 @@ pkgbase = blast+ pkgdesc = BLAST tool suite from NCBI (blastn, blastp, blastx, psiblast, etc) pkgver = 2.14.0 - pkgrel = 2 + pkgrel = 3 url = http://blast.ncbi.nlm.nih.gov/ arch = i686 arch = x86_64 license = custom makedepends = cpio - makedepends = gcc12 - depends = gcc12-libs + makedepends = gcc + depends = gcc-libs depends = libelf depends = zlib depends = bzip2 @@ -29,6 +29,8 @@ pkgbase = blast+ conflicts = proj replaces = ncbi-blast source = https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.14.0/ncbi-blast-2.14.0+-src.tar.gz + source = cstdint.patch sha256sums = bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500 + sha256sums = 7cae72ec356224d9a75c4ce1c6c276dcb22b9a36b3d92f9c57b024dff23cc7f2 pkgname = blast+ @@ -5,36 +5,45 @@ pkgname=blast+ pkgver=2.14.0 -pkgrel=2 +pkgrel=3 pkgdesc="BLAST tool suite from NCBI (blastn, blastp, blastx, psiblast, etc)" arch=('i686' 'x86_64') url="http://blast.ncbi.nlm.nih.gov/" license=('custom') -depends=('gcc12-libs' - 'libelf' - 'zlib' - 'bzip2' - 'lzo' - 'zstd' - 'db' - 'pcre' - 'perl' - 'python' - 'lmdb' - 'libuv' - 'libnghttp2' - 'sqlite') -makedepends=('cpio' 'gcc12') +depends=( + 'gcc-libs' + 'libelf' + 'zlib' + 'bzip2' + 'lzo' + 'zstd' + 'db' + 'pcre' + 'perl' + 'python' + 'lmdb' + 'libuv' + 'libnghttp2' + 'sqlite' +) +makedepends=('cpio' 'gcc') # conflicts with proj on libproj.so conflicts=('blast' 'blast+-bin' 'ncbi-blast' 'proj') provides=('blast') replaces=('ncbi-blast') -source=("https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz") -sha256sums=('bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500') +source=( + "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz" + "cstdint.patch" +) +sha256sums=( + 'bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500' + '7cae72ec356224d9a75c4ce1c6c276dcb22b9a36b3d92f9c57b024dff23cc7f2' +) prepare() { cd "$srcdir"/ncbi-blast-"$pkgver"+-src/c++ || exit - CC=/usr/bin/gcc-12 CXX=/usr/bin/g++-12 ./configure \ + patch --forward --strip 1 --input="${srcdir}/cstdint.patch" + ./configure \ --prefix=/usr \ --with-dll \ --with-mt diff --git a/cstdint.patch b/cstdint.patch new file mode 100644 index 000000000000..58151d3b8dff --- /dev/null +++ b/cstdint.patch @@ -0,0 +1,12 @@ +*** c++/include/util/impl/compile_time_bits.hpp 2023-01-05 07:04:14.000000000 -0800 +--- c++/include/util/impl/compile_time_bits.hpp 2023-06-19 12:41:35.780871378 -0700 +*************** +*** 35,40 **** +--- 35,41 ---- + * + */ + ++ #include <cstdint> + #include <type_traits> + #include <limits> + #include <stdexcept> |