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authorGrey Christoforo2016-02-16 12:34:33 +0000
committerGrey Christoforo2016-02-16 12:34:33 +0000
commit1899c04ed705e3e450d298afa421dc63460f1b72 (patch)
treecf24bf97254cc960e4c7c8d1d0ad54acbbd350a9
parent2a4299953b26d240ec69084b8ee3259f457deef2 (diff)
downloadaur-1899c04ed705e3e450d298afa421dc63460f1b72.tar.gz
bump to 2.2.7
-rw-r--r--.SRCINFO10
-rw-r--r--PKGBUILD10
2 files changed, 8 insertions, 12 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 9db153a47df3..ed7da0d139bf 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,15 +1,15 @@
# Generated by mksrcinfo v8
-# Sat Jan 30 13:48:33 UTC 2016
+# Tue Feb 16 12:34:02 UTC 2016
pkgbase = bowtie2
pkgdesc = Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence.
- pkgver = 2.2.6
- pkgrel = 6
+ pkgver = 2.2.7
+ pkgrel = 1
url = http://bowtie-bio.sourceforge.net/bowtie2
arch = any
license = GPL3
optdepends = intel-tbb: faster multithreading
- source = https://github.com/BenLangmead/bowtie2/archive/v2.2.6.tar.gz
- md5sums = 9e5d10dff2424177e8051092ff502bb6
+ source = https://github.com/BenLangmead/bowtie2/archive/v2.2.7.tar.gz
+ md5sums = 01381a2b89c72b4c4fac0d198590d198
pkgname = bowtie2
diff --git a/PKGBUILD b/PKGBUILD
index e5aa851713e3..1c74d05c7342 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,15 +2,15 @@
# Maintainer: Grey Christoforo <first name [at] last name [dot] net>
pkgname=bowtie2
-pkgver=2.2.6
-pkgrel=6
+pkgver=2.2.7
+pkgrel=1
pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence."
arch=("any")
optdepends=('intel-tbb: faster multithreading')
url="http://bowtie-bio.sourceforge.net/bowtie2"
license=('GPL3')
source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz")
-md5sums=('9e5d10dff2424177e8051092ff502bb6')
+md5sums=('01381a2b89c72b4c4fac0d198590d198')
prepare() {
cd "${srcdir}/${pkgname}-${pkgver}"
@@ -35,10 +35,6 @@ package() {
cp -a "${srcdir}/${pkgname}-${pkgver}"/* "${pkgdir}/opt/${pkgname}"/.
cd "${srcdir}/${pkgname}-${pkgver}"
make DESTDIR="${pkgdir}" install
- #mkdir -p ${pkgdir}/usr/share/doc/${pkgname}
- #cp -a doc/* ${pkgdir}/usr/share/doc/${pkgname}/.
- #cp -a example ${pkgdir}/usr/share/doc/${pkgname}
- #cp -a scripts ${pkgdir}/usr/share/doc/${pkgname}
install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}"
install -Dm644 ${srcdir}/${pkgname}-${pkgver}/LICENSE -t "$pkgdir/usr/share/licenses/${pkgname}"
}