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author | Grey Christoforo | 2017-03-11 14:03:20 +0000 |
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committer | Grey Christoforo | 2017-03-11 14:03:20 +0000 |
commit | 1ab892ea5a1a9ab6dd8499868b46ad2108ce99ff (patch) | |
tree | 8690de6d1c56d151cac860eaa452ee8cbf59ec4e | |
parent | 413591a7b1b8222e5b8d1cfd53e3149aedca2f54 (diff) | |
download | aur-1ab892ea5a1a9ab6dd8499868b46ad2108ce99ff.tar.gz |
version bump
-rw-r--r-- | .SRCINFO | 9 | ||||
-rw-r--r-- | PKGBUILD | 15 |
2 files changed, 13 insertions, 11 deletions
@@ -1,15 +1,16 @@ # Generated by mksrcinfo v8 -# Tue May 10 12:41:25 UTC 2016 +# Sat Mar 11 14:03:13 UTC 2017 pkgbase = bowtie2 pkgdesc = Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. - pkgver = 2.2.9 + pkgver = 2.3.1 pkgrel = 1 url = http://bowtie-bio.sourceforge.net/bowtie2 arch = any license = GPL3 + depends = termcap optdepends = intel-tbb: faster multithreading - source = https://github.com/BenLangmead/bowtie2/archive/v2.2.9.tar.gz - md5sums = 168bdcd6a648e96d8a9a854cdbae24d8 + source = https://github.com/BenLangmead/bowtie2/archive/v2.3.1.tar.gz + md5sums = 537d24b27a90677bbc54b970da5b597e pkgname = bowtie2 @@ -2,15 +2,16 @@ # Maintainer: Grey Christoforo <first name [at] last name [dot] net> pkgname=bowtie2 -pkgver=2.2.9 +pkgver=2.3.1 pkgrel=1 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." arch=("any") +depends=('termcap') optdepends=('intel-tbb: faster multithreading') url="http://bowtie-bio.sourceforge.net/bowtie2" license=('GPL3') source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz") -md5sums=('168bdcd6a648e96d8a9a854cdbae24d8') +md5sums=('537d24b27a90677bbc54b970da5b597e') prepare() { cd "${srcdir}/${pkgname}-${pkgver}" @@ -22,17 +23,17 @@ build() { if pacman -Q intel-tbb > /dev/null 2>/dev/null; then #msg2 "Building with Intel's TBB multithreading support" #WITH_TBB=1 make prefix=/usr - # tbb is broken in this release...remove this when fixed - WITH_TBB=0 make + # tbb is _STILL_ broken in this release...remove this when fixed + NO_TBB=1 make prefix=/usr else msg2 "You haven't installed the intel-tbb package; building without Intel's TBB multithreading support" - WITH_TBB=0 make + NO_TBB=1 make fi } package() { - mkdir -p "${pkgdir}/opt/${pkgname}" - cp -a "${srcdir}/${pkgname}-${pkgver}"/* "${pkgdir}/opt/${pkgname}"/. + mkdir -p "${pkgdir}/opt/" + cp -a "${srcdir}/${pkgname}-${pkgver}" "${pkgdir}/opt/${pkgname}" cd "${srcdir}/${pkgname}-${pkgver}" make prefix=/usr DESTDIR="${pkgdir}" install install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}" |