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| author | Grey Christoforo | 2016-05-10 13:41:59 +0100 |
|---|---|---|
| committer | Grey Christoforo | 2016-05-10 13:41:59 +0100 |
| commit | 413591a7b1b8222e5b8d1cfd53e3149aedca2f54 (patch) | |
| tree | 92097d81f1328d3503c88e42699db1d060c25ca0 | |
| parent | be1060a66fd9f2681d766668e835196ae4cf9e5a (diff) | |
| download | aur-413591a7b1b8222e5b8d1cfd53e3149aedca2f54.tar.gz | |
bump to 2.2.9
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | PKGBUILD | 14 |
3 files changed, 12 insertions, 11 deletions
@@ -1,15 +1,15 @@ # Generated by mksrcinfo v8 -# Sun Mar 13 20:06:50 UTC 2016 +# Tue May 10 12:41:25 UTC 2016 pkgbase = bowtie2 pkgdesc = Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. - pkgver = 2.2.8 + pkgver = 2.2.9 pkgrel = 1 url = http://bowtie-bio.sourceforge.net/bowtie2 arch = any license = GPL3 optdepends = intel-tbb: faster multithreading - source = https://github.com/BenLangmead/bowtie2/archive/v2.2.8.tar.gz - md5sums = 42948ac7744d691a7a643ed94a36ed63 + source = https://github.com/BenLangmead/bowtie2/archive/v2.2.9.tar.gz + md5sums = 168bdcd6a648e96d8a9a854cdbae24d8 pkgname = bowtie2 diff --git a/.gitignore b/.gitignore index 32f0ae164510..922dfb2216fd 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,4 @@ src/ pkg/ *.tar.gz *.tar.xz +*.tar @@ -2,7 +2,7 @@ # Maintainer: Grey Christoforo <first name [at] last name [dot] net> pkgname=bowtie2 -pkgver=2.2.8 +pkgver=2.2.9 pkgrel=1 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." arch=("any") @@ -10,7 +10,7 @@ optdepends=('intel-tbb: faster multithreading') url="http://bowtie-bio.sourceforge.net/bowtie2" license=('GPL3') source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz") -md5sums=('42948ac7744d691a7a643ed94a36ed63') +md5sums=('168bdcd6a648e96d8a9a854cdbae24d8') prepare() { cd "${srcdir}/${pkgname}-${pkgver}" @@ -20,13 +20,13 @@ prepare() { build() { cd "${srcdir}/${pkgname}-${pkgver}" if pacman -Q intel-tbb > /dev/null 2>/dev/null; then - msg2 "Building with Intel's TBB multithreading support" - #WITH_TBB=1 make + #msg2 "Building with Intel's TBB multithreading support" + #WITH_TBB=1 make prefix=/usr # tbb is broken in this release...remove this when fixed - WITH_TBB=0 make + WITH_TBB=0 make else msg2 "You haven't installed the intel-tbb package; building without Intel's TBB multithreading support" - WITH_TBB=0 make + WITH_TBB=0 make fi } @@ -34,7 +34,7 @@ package() { mkdir -p "${pkgdir}/opt/${pkgname}" cp -a "${srcdir}/${pkgname}-${pkgver}"/* "${pkgdir}/opt/${pkgname}"/. cd "${srcdir}/${pkgname}-${pkgver}" - make DESTDIR="${pkgdir}" install + make prefix=/usr DESTDIR="${pkgdir}" install install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}" install -Dm644 ${srcdir}/${pkgname}-${pkgver}/LICENSE -t "$pkgdir/usr/share/licenses/${pkgname}" } |