install scripts and examples

1 files changed, 19 insertions, 11 deletions

diff --git a/PKGBUILD b/PKGBUILD
index da11fa232ceb..ff0491bc8019 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,29 +1,37 @@
-# Maintainer: Grey Christoforo <grey@christoforo.net>
-# Contributer: Thiago Yukio Kikuchi Oliveira <stratust@gmail.com>
-# Contributer:  Decrypted Epsilon <decrypted.epsilon (at) gmail (dot) com>
+# $Id$
+# Maintainer: Grey Christoforo <first name [at] last name [dot] net>
 
 pkgname=bowtie2
 pkgver=2.2.6
 pkgrel=4
 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence."
 arch=("any")
+optdepends=('intel-tbb: faster multithreading')
 url="http://bowtie-bio.sourceforge.net/bowtie2"
 license=('GPL3')
 source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz")
-
+md5sums=('9e5d10dff2424177e8051092ff502bb6')
 
 build() {
    cd $srcdir/$pkgname-$pkgver
-   make clean
-   make
+   if pacman -Q intel-tbb > /dev/null 2>/dev/null; then
+      msg2 "Building with Intel's TBB multithreading support"
+      #WITH_TBB=1 make
+      # tbb is broken in this release...remove this when fixed
+      WITH_TBB=0 make
+   else
+      msg2 "You haven't installed the intel-tbb package; building without Intel's TBB multithreading support"
+      WITH_TBB=0 make
+   fi
 }
 
 package() {
    cd "${srcdir}/${pkgname}-${pkgver}"
    make DESTDIR="${pkgdir}" install
-   install -d ${pkgdir}/usr/share/doc/${pkgname}
-   install -Dm644 doc/* ${pkgdir}/usr/share/doc/${pkgname}
-   install -Dm644 MANUAL "${pkgdir}/usr/share/doc/${pkgname}/MANUAL"
-   install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
+   mkdir -p ${pkgdir}/usr/share/doc/${pkgname}
+   cp -a doc/* ${pkgdir}/usr/share/doc/${pkgname}/.
+   cp -a example ${pkgdir}/usr/share/doc/${pkgname}
+   cp -a scripts ${pkgdir}/usr/share/doc/${pkgname}
+   install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}"
+   install -Dm644 ${srcdir}/${pkgname}-${pkgver}/LICENSE -t "$pkgdir/usr/share/licenses/${pkgname}"
 }
-md5sums=('9e5d10dff2424177e8051092ff502bb6')