diff options
| author | Grey Christoforo | 2015-06-20 19:53:23 +0200 |
|---|---|---|
| committer | Grey Christoforo | 2015-06-20 19:53:23 +0200 |
| commit | b77fd0c5250932c3eb3e1e394047545f8ccc432d (patch) | |
| tree | ee3b7ee5096d86df8c4566ad68bb3eade0612bb0 | |
| download | aur-b77fd0c5250932c3eb3e1e394047545f8ccc432d.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 12 | ||||
| -rw-r--r-- | PKGBUILD | 36 |
2 files changed, 48 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..2cf87215ed81 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,12 @@ +pkgbase = bowtie2 + pkgdesc = Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. + pkgver = 2.2.5 + pkgrel = 1 + url = http://bowtie-bio.sourceforge.net/bowtie2 + arch = x86_64 + license = GPL3 + source = http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip + sha512sums = 8b97860fea73ef36a60dee3dbccdfc956ac7f619ec47a7b820d1df09cff8f77362ddc8071b59ea8021444bda59757d68bdf486fb453d5c4e4b896198bc465d60 + +pkgname = bowtie2 + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..cb941eb2e873 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,36 @@ +# Maintainer: Thiago Yukio Kikuchi Oliveira <stratust@gmail.com> +# Contributer: Decrypted Epsilon <decrypted.epsilon (at) gmail (dot) com> + +pkgname=bowtie2 +pkgver=2.2.5 +_pkgver=$pkgver +pkgrel=1 +pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." +arch=("x86_64") +url="http://bowtie-bio.sourceforge.net/bowtie2" +license=('GPL3') +source=(http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/$_pkgver/$pkgname-$_pkgver-source.zip) +sha512sums=('8b97860fea73ef36a60dee3dbccdfc956ac7f619ec47a7b820d1df09cff8f77362ddc8071b59ea8021444bda59757d68bdf486fb453d5c4e4b896198bc465d60') + +build() { + cd $srcdir/$pkgname-$_pkgver + make +} + +package() { + cd "${srcdir}/${pkgname}-${_pkgver}" + install -d ${pkgdir}/usr/bin + install -d ${pkgdir}/usr/share/doc/${pkgname} + install -Dm755 bowtie2 ${pkgdir}/usr/bin + install -Dm755 bowtie2-align-l ${pkgdir}/usr/bin + install -Dm755 bowtie2-align-s ${pkgdir}/usr/bin + install -Dm755 bowtie2-build ${pkgdir}/usr/bin + install -Dm755 bowtie2-build-l ${pkgdir}/usr/bin + install -Dm755 bowtie2-build-s ${pkgdir}/usr/bin + install -Dm755 bowtie2-inspect ${pkgdir}/usr/bin + install -Dm755 bowtie2-inspect-l ${pkgdir}/usr/bin + install -Dm755 bowtie2-inspect-s ${pkgdir}/usr/bin + install -Dm644 doc/* ${pkgdir}/usr/share/doc/${pkgname} + install -Dm644 MANUAL "${pkgdir}/usr/share/doc/${pkgname}/MANUAL" + install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" +} |