diff options
| author | Grey Christoforo | 2015-08-03 10:39:29 +0200 |
|---|---|---|
| committer | Grey Christoforo | 2015-08-03 10:39:29 +0200 |
| commit | c7205e0bd9ff7e1fd54fcdf01f5e519218f980e4 (patch) | |
| tree | 03d5dbd83740d4187bdb334488eb63065ab7cd8b | |
| parent | 60baf1d6e0163f34ef6a8bb544212486e2503ce6 (diff) | |
| download | aur-c7205e0bd9ff7e1fd54fcdf01f5e519218f980e4.tar.gz | |
use make install, update source url
| -rw-r--r-- | .SRCINFO | 6 | ||||
| -rw-r--r-- | PKGBUILD | 26 |
2 files changed, 11 insertions, 21 deletions
@@ -1,11 +1,11 @@ pkgbase = bowtie2 pkgdesc = Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. pkgver = 2.2.6 - pkgrel = 1 + pkgrel = 2 url = http://bowtie-bio.sourceforge.net/bowtie2 - arch = x86_64 + arch = any license = GPL3 - source = bowtie2-2.2.6-source.zip::https://github.com/BenLangmead/bowtie2/blob/master/latest_release/bowtie2-2.2.6-source.zip?raw=true + source = https://github.com/BenLangmead/bowtie2/releases/download/v2.2.6/bowtie2-2.2.6-source.zip sha512sums = 3ab5a5475cf214affd91e0d1782fd2d6dedccd979e3c809b5dfb272726d99ff1c7b59d92e387b187a7c2e43557786a1085186ccb96588de91212caf2eb94ce4f pkgname = bowtie2 @@ -4,34 +4,24 @@ pkgname=bowtie2 pkgver=2.2.6 -_pkgver=$pkgver -pkgrel=1 +pkgrel=2 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." -arch=("x86_64") +arch=("any") url="http://bowtie-bio.sourceforge.net/bowtie2" license=('GPL3') -source=(bowtie2-2.2.6-source.zip::https://github.com/BenLangmead/bowtie2/blob/master/latest_release/bowtie2-2.2.6-source.zip?raw=true) -#source=(http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/$_pkgver/$pkgname-$_pkgver-source.zip) +source=("https://github.com/BenLangmead/bowtie2/releases/download/v$pkgver/$pkgname-$pkgver-source.zip") +#source=(http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/$pkgver/$pkgname-$pkgver-source.zip) sha512sums=('3ab5a5475cf214affd91e0d1782fd2d6dedccd979e3c809b5dfb272726d99ff1c7b59d92e387b187a7c2e43557786a1085186ccb96588de91212caf2eb94ce4f') build() { - cd $srcdir/$pkgname-$_pkgver + cd $srcdir/$pkgname-$pkgver + make clean make } package() { - cd "${srcdir}/${pkgname}-${_pkgver}" - install -d ${pkgdir}/usr/bin - install -d ${pkgdir}/usr/share/doc/${pkgname} - install -Dm755 bowtie2 ${pkgdir}/usr/bin - install -Dm755 bowtie2-align-l ${pkgdir}/usr/bin - install -Dm755 bowtie2-align-s ${pkgdir}/usr/bin - install -Dm755 bowtie2-build ${pkgdir}/usr/bin - install -Dm755 bowtie2-build-l ${pkgdir}/usr/bin - install -Dm755 bowtie2-build-s ${pkgdir}/usr/bin - install -Dm755 bowtie2-inspect ${pkgdir}/usr/bin - install -Dm755 bowtie2-inspect-l ${pkgdir}/usr/bin - install -Dm755 bowtie2-inspect-s ${pkgdir}/usr/bin + cd "${srcdir}/${pkgname}-${pkgver}" + make DESTDIR="${pkgdir}" install install -Dm644 doc/* ${pkgdir}/usr/share/doc/${pkgname} install -Dm644 MANUAL "${pkgdir}/usr/share/doc/${pkgname}/MANUAL" install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" |