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authorChristian Krause2015-06-13 11:56:51 +0200
committerChristian Krause2015-06-13 11:56:51 +0200
commitdb1b730e2ba2d5eaf03e0ae8e3d9f7abc2a93d48 (patch)
treef9828aa59c5558c8cdbfe296e2d94ab7eb9720d8
downloadaur-db1b730e2ba2d5eaf03e0ae8e3d9f7abc2a93d48.tar.gz
Initial import
-rw-r--r--.SRCINFO15
-rw-r--r--PKGBUILD27
2 files changed, 42 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 00000000000..8518d1feb06
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,15 @@
+pkgbase = bwa
+ pkgdesc = Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome
+ pkgver = 0.7.12
+ pkgrel = 1
+ url = http://bio-bwa.sourceforge.net/
+ arch = i686
+ arch = x86_64
+ license = GPL3
+ depends = perl
+ depends = zlib
+ source = http://downloads.sourceforge.net/bio-bwa/0.7.12/bwa-0.7.12.tar.bz2
+ md5sums = 075704634146ec8cc7543c0dee8960e7
+
+pkgname = bwa
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 00000000000..2d7e093dce2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,27 @@
+# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
+
+pkgname=bwa
+pkgver=0.7.12
+pkgrel=1
+pkgdesc="Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome"
+arch=('i686' 'x86_64')
+url="http://bio-bwa.sourceforge.net/"
+license=('GPL3')
+depends=('perl' 'zlib')
+source=(http://downloads.sourceforge.net/bio-bwa/$pkgver/$pkgname-$pkgver.tar.bz2)
+md5sums=('075704634146ec8cc7543c0dee8960e7')
+
+build() {
+ cd $srcdir/$pkgname-$pkgver
+
+ make
+}
+
+package() {
+ cd $srcdir/$pkgname-$pkgver
+
+ install -Dm755 bwa $pkgdir/usr/bin/bwa
+ install -Dm755 qualfa2fq.pl $pkgdir/usr/bin/qualfa2fq
+ install -Dm755 xa2multi.pl $pkgdir/usr/bin/xa2multi
+ install -Dm644 bwa.1 $pkgdir/usr/share/man/man1/bwa.1
+}