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| author | Josh Marshall | 2018-03-15 16:14:10 -0400 |
|---|---|---|
| committer | Josh Marshall | 2018-03-15 16:14:10 -0400 |
| commit | f75e67af09ba1d2b67a676f7090de64a0a2320e1 (patch) | |
| tree | bb1157e23805addf13e08235651697d6e603d982 | |
| download | aur-f75e67af09ba1d2b67a676f7090de64a0a2320e1.tar.gz | |
Initial commit
| -rw-r--r-- | .SRCINFO | 21 | ||||
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | PKGBUILD | 39 |
3 files changed, 64 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..eea4b6abe56c --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,21 @@ +pkgbase = cath-tool-git + pkgdesc = Protein structure comparison tools such as SSAP and SNAP + pkgver = 1 + pkgrel = 1 + url = http://orengogroup.info/software/ + arch = i686 + arch = x86_64 + license = GPL3 + makedepends = gsl + makedepends = cmake + makedepends = ninja + makedepends = make + makedepends = git + depends = gsl + provides = cath-tools + conflicts = cath-tools + source = cath-tools::git+https://github.com/anadon/cath-tools + md5sums = SKIP + +pkgname = cath-tool-git + diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..6e15e651603f --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +cath-tool-git-1-1-x86_64.pkg.tar.xz +cath-tools/ +pkg/ +src/ diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..68d417e09bd3 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: Josh Marshall <jrmarsha@mtu.edu> + +pkgname=cath-tool-git +pkgver=1 +pkgrel=1 +pkgdesc="Protein structure comparison tools such as SSAP and SNAP" +arch=('i686' 'x86_64') +license=('GPL3') +url="http://orengogroup.info/software/" +depends=('gsl') +makedepends=('gsl' 'cmake' 'ninja' 'make' 'git') +provides=('cath-tools') +conflicts=('cath-tools') +source=("cath-tools::git+https://github.com/anadon/cath-tools") +md5sums=('SKIP') + +build() { + cd "$provides" + cmake -G Ninja -DCMAKE_BUILD_TYPE=RELEASE -D USE_STATIC_GSL:BOOL=FALSE . + ninja +} + +check() { + cd "$provides" + CATH_TOOLS_BIN_DIR=. prove -l -v perl/t +} + +package() { + cd "$provides" + #make install + #Install the executables + mkdir -p "$pkgdir/usr/bin" + cp -t "$pkgdir/usr/bin" cath-resolve-hits cath-score-align cath-assign-domains cath-ssap cath-cluster cath-superpose cath-map-clusters cath-refine-align + + #Install the libraries + cd source + mkdir "$pkgdir/usr/lib" + cp -t "$pkgdir/usr/lib" libct_options.a libct_resolve_hits.a libct_seq.a libct_biocore.a libct_test.a libct_cath_assign_domains.a libct_uni.a libct_cath_cluster.a libct_cath_refine_align.a libct_cath_score_align.a libct_cath_superpose.a libct_chopping.a libct_clustagglom.a libct_cluster.a libct_common.a libct_display_colour.a +} |