Initial commit

2 files changed, 96 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f4f7ac9e08fe
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,22 @@
+pkgbase = ccpnmr
+	pkgdesc = An interactive NMR spectrum visualisation, resonance assignment and analysis program
+	pkgver = 2.4.2
+	pkgrel = 1
+	url = https://www.ccpn.ac.uk
+	arch = x86_64
+	license = LGPL2.1
+	license = custom
+	makedepends = sed
+	makedepends = gcc
+	depends = tcsh
+	depends = python2
+	depends = freeglut
+	depends = glu
+	depends = tk
+	optdepends = python2-numpy: extends Analysis functionality
+	optdepends = tix: used in ARIA
+	source = http://www.ccpn.ac.uk/download/ccpnmr/analysis2.4.2.tar.gz
+	sha256sums = 14941131033cbd4b0b13d6d4fe3f9253360a7c2ace8ece9194be00c1fe4b2903
+
+pkgname = ccpnmr
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5526173bc565
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,74 @@
+# Maintainer: Anton Kudelin <kudelin at protonmail dot com>
+
+pkgname=ccpnmr
+pkgver=2.4.2
+pkgrel=1
+pkgdesc="An interactive NMR spectrum visualisation, resonance assignment and analysis program"
+arch=("x86_64")
+url="https://www.ccpn.ac.uk"
+license=('LGPL2.1' 'custom')
+depends=('tcsh' 'python2' 'freeglut' 'glu' 'tk')
+makedepends=('sed' 'gcc')
+optdepends=('python2-numpy: extends Analysis functionality'
+            'tix: used in ARIA')
+source=("http://www.ccpn.ac.uk/download/$pkgname/analysis$pkgver.tar.gz")
+sha256sums=('14941131033cbd4b0b13d6d4fe3f9253360a7c2ace8ece9194be00c1fe4b2903')
+
+prepare() {
+    export CCPNMR_TOP_DIR=$srcdir/$pkgname
+    cd $srcdir/$pkgname/${pkgname}${pkgver:0:3}/c
+    cp environment_default.txt environment.txt
+    sed -i 's/2.5/2.7/' environment.txt
+    sed -i 's/8.5/8.6/' environment.txt
+    sed -i 's#-I$(GL_DIR)/include#-I$(GL_DIR)/include/GL#' environment.txt
+    mkdir $srcdir/$pkgname/bin
+}
+
+build() {
+    cd $srcdir/$pkgname/${pkgname}${pkgver:0:3}/c
+    make -j1
+}
+
+package() {
+    cd $srcdir/$pkgname/${pkgname}${pkgver:0:3}
+    install -dm755 $pkgdir/usr/{bin,lib,share/licenses/$pkgname}
+    install -dm755 $pkgdir/usr/lib/python2.7/site-packages/$pkgname
+    install -dm755 $pkgdir/usr/lib/python2.7/site-packages/$pkgname-$pkgver-py2.7.egg-info
+    cp -r doc data license model python $pkgdir/usr/lib/python2.7/site-packages/$pkgname
+    install -m755 license/CCPN.license $pkgdir/usr/share/licenses/$pkgname
+    
+    cd c
+    find . -type d -exec mkdir -p $pkgdir/usr/lib/{} \;
+    find . -name "*.so" -exec install -m755 {} $pkgdir/usr/lib/{} \;
+    find $pkgdir/usr/lib/python2.7/site-packages/$pkgname/python -name "linkSharedObjs" -exec sed -i "/rm/d" {} \;
+    find $pkgdir/usr/lib/python2.7/site-packages/$pkgname/python -name "linkSharedObjs" -exec sed -i "s#../../../c#../../../../../..#g" {} \;
+    cd $pkgdir/usr/lib/python2.7/site-packages/$pkgname/python/memops/c
+    source linkSharedObjs; rm *Shared*; cd ../..
+    cd ccp/c; source linkSharedObjs; rm *Shared*; cd ../..
+    cd ccpnmr/c; source linkSharedObjs; rm *Shared*
+    
+    cd $pkgdir/usr/lib/python2.7/site-packages/$pkgname-$pkgver-py2.7.egg-info
+    touch dependency_links.txt PKG-INFO SOURCES.txt
+    echo "$pkgname" > top_level.txt
+    
+    cat <<EOF > $pkgdir/usr/bin/analysis
+#!/bin/bash
+export PYTHONPATH=/usr/lib/python2.7/site-packages/ccpnmr/python
+python2 -i -O /usr/lib/python2.7/site-packages/ccpnmr/python/ccpnmr/analysis/AnalysisGui.py $*
+EOF
+
+    cat <<EOF > $pkgdir/usr/bin/formatConverter
+#!/bin/bash
+export PYTHONPATH=/usr/lib/python2.7/site-packages/ccpnmr/python
+python2 -i -O /usr/lib/python2.7/site-packages/ccpnmr/python/ccpnmr/format/gui/FormatConverter.py $*
+EOF
+
+    cat <<EOF > $pkgdir/usr/bin/pipe2azara
+#!/bin/bash
+export PYTHONPATH=/usr/lib/python2.7/site-packages/ccpnmr/python
+python2 -i -O /usr/lib/python2.7/site-packages/ccpnmr/python/ccpnmr/analysis/NmrPipeData.py $*
+EOF
+
+    cd $pkgdir/usr/bin
+    chmod 755 analysis formatConverter pipe2azara
+}