diff options
| author | Saulius Lukauskas | 2015-08-05 11:47:11 +0100 |
|---|---|---|
| committer | Saulius Lukauskas | 2015-08-05 11:47:11 +0100 |
| commit | cc607a462765cfb3625ee83a39ec69c6c25a6c55 (patch) | |
| tree | bfca97bfb29b7a0aa8ccfd4a6757d6bd442d0443 | |
| download | aur-cc607a462765cfb3625ee83a39ec69c6c25a6c55.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 18 | ||||
| -rw-r--r-- | PKGBUILD | 42 |
2 files changed, 60 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..f48727c1bd66 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,18 @@ +pkgbase = chromasig-seq + pkgdesc = ChromaSig is an unsupervised learning method to search for common patterns (motifs) of histone modifications. Chromasig was proposed by Gary Hon et al + pkgver = 1.0 + pkgrel = 1 + url = http://wanglab.ucsd.edu/star/download.php + arch = x86_64 + arch = i686 + license = unknown + depends = perl + depends = swig + depends = mysql + depends = perl-math-cdf + depends = perl-dbd-mysql + source = http://tabit.ucsd.edu/download/ChromaSig.tar.gz + sha1sums = 5ce0adc33dbc4c3f577a0476c5c5d5bea2b413f2 + +pkgname = chromasig-seq + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5c709e1e9e8d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,42 @@ +# Maintainer: Sauliusl <luksaulius[at]gmail> +pkgname=chromasig-seq +pkgver=1.0 +pkgrel=1 +pkgdesc="ChromaSig is an unsupervised learning method to search for common patterns ("motifs") of histone modifications. Chromasig was proposed by Gary Hon et al" +url="http://wanglab.ucsd.edu/star/download.php" +arch=('x86_64' 'i686') +license=('unknown') +depends=('perl' 'swig' 'mysql' 'perl-math-cdf' 'perl-dbd-mysql') +optdepends=() +makedepends=() +conflicts=() +replaces=() +backup=() +install=() +source=("http://tabit.ucsd.edu/download/ChromaSig.tar.gz") +sha1sums=('5ce0adc33dbc4c3f577a0476c5c5d5bea2b413f2') + +build() { + cd ${srcdir}/ChromaSig/ChromaSig-seq/ + sed -i 's/gmake/make/' install.ChromaSig + ./install.ChromaSig # Ignore the name, this actually just builds it +} + +package() { + install -d ${pkgdir}/usr/lib/chromasig-seq/euclidean_dist/ + install -d ${pkgdir}/usr/lib/chromasig-seq/fast_pmf_cycle/ + install -d ${pkgdir}/usr/bin/ + cd ${srcdir}/ChromaSig/ChromaSig-seq/scripts + install -Dm0755 euclidean_dist/*.so ${pkgdir}/usr/lib/chromasig-seq/euclidean_dist/ + install -Dm0644 euclidean_dist/*.o ${pkgdir}/usr/lib/chromasig-seq/euclidean_dist/ + install -Dm0644 euclidean_dist/*.pm ${pkgdir}/usr/lib/chromasig-seq/euclidean_dist/ + install -Dm0755 fast_pmf_cycle/*.so ${pkgdir}/usr/lib/chromasig-seq/fast_pmf_cycle/ + install -Dm0644 fast_pmf_cycle/*.o ${pkgdir}/usr/lib/chromasig-seq/fast_pmf_cycle/ + install -Dm0644 fast_pmf_cycle/*.pm ${pkgdir}/usr/lib/chromasig-seq/fast_pmf_cycle/ + + sed -i 's/use lib "$FindBin::Bin/use lib "\/usr\/lib\/chromasig-seq/' ChromaSig.pl + + install -Dm0755 *.pl ${pkgdir}/usr/bin/ +} + +# vim:set ts=2 sw=2 et:
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