Initial import

5 files changed, 114 insertions, 0 deletions

diff --git a/.AURINFO b/.AURINFO
new file mode 100644
index 000000000000..c488ad8fa7f9
--- /dev/null
+++ b/.AURINFO
@@ -0,0 +1,17 @@
+pkgbase = copasi
+	pkgdesc = COmplex PAthway SImulator for analysis of biochemical networks and their dynamics
+	pkgver = 4.13.87
+	pkgrel = 1
+	url = http://www.copasi.org/
+	install = copasi.install
+	arch = i686
+	arch = x86_64
+	license = Artistic 2.0
+	depends = shared-mime-info
+	depends = qtwebkit
+	depends = glu
+	source = copasi-desktop.tar.gz
+	noextract = copasi-4.13.87.tar.gz
+
+pkgname = copasi
+
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e6b21b0bbd68
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,18 @@
+pkgbase = copasi
+	pkgdesc = COmplex PAthway SImulator for analysis of biochemical networks and their dynamics
+	pkgver = 4.13.87
+	pkgrel = 1
+	url = http://www.copasi.org/
+	install = copasi.install
+	arch = i686
+	arch = x86_64
+	license = Artistic 2.0
+	depends = shared-mime-info
+	depends = qtwebkit
+	depends = glu
+	noextract = copasi-4.13.87.tar.gz
+	source = copasi-desktop.tar.gz
+	md5sums = 9582e4e3d0d1d5433dea4c48f1f5f396
+
+pkgname = copasi
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..69f8f30c799a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,44 @@
+# Maintainer: Michael Schubert <mschu.dev at google mail>
+
+pkgname=copasi
+pkgver=4.13.87
+pkgrel=1
+pkgdesc="COmplex PAthway SImulator for analysis of biochemical networks and their dynamics"
+arch=('i686' 'x86_64')
+url="http://www.copasi.org/"
+license=('Artistic 2.0')
+depends=('shared-mime-info' 'qtwebkit' 'glu')
+source=('copasi-desktop.tar.gz')
+md5sums=('9582e4e3d0d1d5433dea4c48f1f5f396')
+install=copasi.install
+noextract=($pkgname-$pkgver.tar.gz)
+
+if [ "$CARCH" = "i686" ]; then
+  source=("${source[@]}" $pkgname-$pkgver.tar.gz::http://www.copasi.org/static/packages/COPASI-$pkgver-Linux-32bit.tar.gz)
+  md5sums=("${md5sums[@]}" '4b66ff9bfb02d7441db0031b7a22e722')
+fi
+if [ "$CARCH" = "x86_64" ]; then
+  source=("${source[@]}" $pkgname-$pkgver.tar.gz::http://www.copasi.org/static/packages/COPASI-$pkgver-Linux-64bit.tar.gz)
+  md5sums=("${md5sums[@]}" '95bf0c46c12bc241c729e708a771ec9f')  
+fi
+
+package() {
+  cd "$srcdir"
+  tar -xf $pkgname-$pkgver.tar.gz --strip=1
+
+  # install program files
+  install -d "$pkgdir"/usr/{bin,share}
+  install -m755 bin/* "$pkgdir/usr/bin"
+  cp -R share/$pkgname "$pkgdir/usr/share/"
+  
+  # desktop integration...
+  cd "$srcdir/$pkgname-desktop"
+  install -Dm755 copasi.sh "$pkgdir/etc/profile.d/copasi.sh"
+  install -Dm644 copasi.desktop "$pkgdir/usr/share/applications/copasi.desktop"
+  install -Dm644 copasi.xml "$pkgdir/usr/share/mime/packages/copasi.xml"
+  install -d "$pkgdir/usr/share/icons/hicolor"
+  cp -R icons/* "$pkgdir/usr/share/icons/hicolor/"
+  # copasi starts CopasiUI after setting COPASIDIR environment variable
+  # useful for launching COPASI using the menu entry
+  install -Dm755 copasi "$pkgdir/usr/bin/copasi"
+}
diff --git a/copasi-desktop.tar.gz b/copasi-desktop.tar.gz
new file mode 100644
index 000000000000..ad27ed39c939
--- /dev/null
+++ b/copasi-desktop.tar.gz
diff --git a/copasi.install b/copasi.install
new file mode 100644
index 000000000000..db58bd1fb42a
--- /dev/null
+++ b/copasi.install
@@ -0,0 +1,35 @@
+# utils function is based on virtualbox.install
+utils() {
+  if [ -x usr/bin/update-mime-database ]; then
+    echo ">>> Updating Shared MIME-Info database..."
+    update-mime-database /usr/share/mime
+#    update-mime-database /usr/share/mime > /dev/null 2>&1
+  fi
+
+  if [ -x usr/bin/xdg-icon-resource ]; then
+    echo ">>> Updating desktop icon system..."
+    xdg-icon-resource forceupdate --theme hicolor
+#    xdg-icon-resource forceupdate --theme hicolor > /dev/null 2>&1
+  fi
+
+  if [ -x usr/bin/update-desktop-database ]; then
+    echo ">>> Updating MIME-desktop association cache database..."
+    update-desktop-database
+#    usr/bin/update-desktop-database -q
+  fi
+}
+
+post_install() {
+  utils
+  echo ">>> COPASIDIR environment variable will be set by /etc/profile.d/copasi.sh"
+  echo ">>> You may have to relogin or source it."
+}
+
+post_upgrade() {
+  utils
+}
+
+post_remove() {
+  utils
+}
+