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| author | Grey Christoforo | 2018-11-12 16:40:32 +0000 |
|---|---|---|
| committer | Grey Christoforo | 2018-11-12 16:40:32 +0000 |
| commit | 4a2013050e584c45392ea25deec8d1980955bdc1 (patch) | |
| tree | 10808c3fbbe0e608bfb30ff5c664d86d0f774942 | |
| parent | 314e5f62ab94f1a744dc24e45660bb0e573f9f23 (diff) | |
| download | aur-4a2013050e584c45392ea25deec8d1980955bdc1.tar.gz | |
work on fixing build
| -rw-r--r-- | .SRCINFO | 4 | ||||
| -rw-r--r-- | PKGBUILD | 14 |
2 files changed, 12 insertions, 6 deletions
@@ -1,9 +1,7 @@ -# Generated by mksrcinfo v8 -# Fri Jul 1 16:07:46 UTC 2016 pkgbase = cufflinks pkgdesc = Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.. pkgver = 2.2.1 - pkgrel = 3 + pkgrel = 4 url = http://cole-trapnell-lab.github.io/projects/cufflinks/ arch = x86_64 license = Artistic @@ -2,7 +2,7 @@ pkgname=cufflinks pkgver=2.2.1 -pkgrel=3 +pkgrel=4 pkgdesc="Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.." arch=("x86_64") url="http://cole-trapnell-lab.github.io/projects/cufflinks/" @@ -11,16 +11,24 @@ depends=('boost' 'eigen3' 'python2' 'samtools' 'perl') source=(https://github.com/cole-trapnell-lab/${pkgname}/archive/v${pkgver}.tar.gz) md5sums=('80328ff4169f2778c0728a4795da85e2') -build() { + +prepare() { cd $srcdir/$pkgname-$pkgver + + ./autogen.sh # cufflinks uses python2 but archlinux uses python3 as default python perl -i -pne '$_ =~ s/python/python2/ if $_ =~ /^#!\/usr/' src/cuffmerge export EIGEN_CPPFLAGS="-I/usr/include/eigen3" export LDFLAGS="-L/usr/lib -lboost_system" ./configure --prefix=/usr - make +} +build() { + cd $srcdir/$pkgname-$pkgver + export EIGEN_CPPFLAGS="-I/usr/include/eigen3" + export LDFLAGS="-L/usr/lib -lboost_system" + make } package() { |