diff options
| author | Grey Christoforo | 2015-06-20 19:53:27 +0200 |
|---|---|---|
| committer | Grey Christoforo | 2015-06-20 19:53:27 +0200 |
| commit | 6f37fa624d96622a558310aa808489813d4867bf (patch) | |
| tree | cd93aff2018ce493968ee141544432432e9283e5 | |
| download | aur-6f37fa624d96622a558310aa808489813d4867bf.tar.gz | |
Initial import
| -rw-r--r-- | .AURINFO | 16 | ||||
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 29 |
3 files changed, 62 insertions, 0 deletions
diff --git a/.AURINFO b/.AURINFO new file mode 100644 index 000000000000..a4cf8ab5ecf1 --- /dev/null +++ b/.AURINFO @@ -0,0 +1,16 @@ +pkgbase = cufflinks + pkgdesc = Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.. + pkgver = 2.2.1 + pkgrel = 1 + url = http://cufflinks.cbcb.umd.edu + arch = x86_64 + license = Artistic + depends = boost + depends = eigen3 + depends = python2 + depends = samtools + depends = perl + source = http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz + +pkgname = cufflinks + diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..9f033b475f73 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = cufflinks + pkgdesc = Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.. + pkgver = 2.2.1 + pkgrel = 1 + url = http://cufflinks.cbcb.umd.edu + arch = x86_64 + license = Artistic + depends = boost + depends = eigen3 + depends = python2 + depends = samtools + depends = perl + source = http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz + md5sums = 9a5ba7a7710cd864932cf205c17851f0 + +pkgname = cufflinks + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..67d7d8fc8867 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,29 @@ +# Maintainer: Thiago Yukio Kikuchi Oliveira <stratust@gmail.com> + +pkgname=cufflinks +pkgver=2.2.1 +pkgrel=1 +pkgdesc="Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.." +arch=("x86_64") +url="http://cufflinks.cbcb.umd.edu" +license=('Artistic') +depends=('boost' 'eigen3' 'python2' 'samtools' 'perl') +source=(http://cufflinks.cbcb.umd.edu/downloads/$pkgname-$pkgver.tar.gz) +md5sums=('9a5ba7a7710cd864932cf205c17851f0') + +build() { + cd $srcdir/$pkgname-$pkgver + # cufflinks use python2 but archlinux uses python3 as default python + perl -i -pne '$_ =~ s/python/python2/ if $_ =~ /^#!\/usr/' src/cuffmerge + + export EIGEN_CPPFLAGS="-I/usr/include/eigen3" + export LDFLAGS="-L/usr/lib -lboost_system" + ./configure --prefix=/usr + make + +} + +package() { + cd "$srcdir/$pkgname-$pkgver" + make DESTDIR="$pkgdir/" install +} |