diff options
| author | Keith Hughitt | 2015-08-27 09:42:36 -0400 |
|---|---|---|
| committer | Keith Hughitt | 2015-08-27 09:42:36 -0400 |
| commit | eef213597c51ea9aeaac49470722323bdb210e29 (patch) | |
| tree | b0e7f5dc65faa9bf37c584d79fdace5466fd3616 | |
| download | aur-eef213597c51ea9aeaac49470722323bdb210e29.tar.gz | |
Initial commit
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 42 |
2 files changed, 59 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..1c26db77cc65 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = dafs-git + pkgdesc = DAFS: simultaneous aligning and folding of RNA sequences by dual decomposition + pkgver = 0.0.2.6.g8b19266 + pkgrel = 1 + url = https://github.com/satoken/dafs + arch = i686 + arch = x86_64 + license = GPL + makedepends = git + depends = boost + depends = glpk + depends = viennarna2 + source = git://github.com/satoken/dafs.git + md5sums = SKIP + +pkgname = dafs-git + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..4c22f45495e9 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,42 @@ +# Maintainer: Keith Hughitt <khughitt@umd.edu> +pkgname=dafs-git +_gitname=dafs +pkgver=0.0.2.6.g8b19266 +pkgrel=1 +pkgdesc="DAFS: simultaneous aligning and folding of RNA sequences by dual +decomposition" +arch=('i686' 'x86_64') +url="https://github.com/satoken/dafs" +license=('GPL') +makedepends=('git') +depends=('boost' 'glpk' 'viennarna2') +md5sums=("SKIP") + +source=("git://github.com/satoken/dafs.git") + +pkgver() { + cd "${srcdir}/${_gitname}" + git describe --tags | sed -e 's:v::' -e 's/-/./g' +} + +build() { + cd "$srcdir/$_gitname" + + env CXXFLAGS='-fopenmp' ./configure --prefix=/usr --with-vienna-rna=/usr/include/ViennaRNA --with-glpk + + # https://github.com/SIPp/sipp/issues/61 + touch configure.ac aclocal.m4 configure Makefile.am Makefile.in + + make CXXFLAGS="-Wall -O2 -fpermissive -fopenmp" CFLAGS="$CFLAGS -I/usr/include/ViennaRNA" PREFIX=/usr +} + +package() { + cd "$srcdir/$_gitname" + + #make PREFIX="$pkgdir/usr" install + make install DESTDIR="$pkgdir" + + # install license + install -D -m644 "COPYING" "$pkgdir/usr/share/licenses/$_gitname/LICENSE" +} + |