Initial version

2 files changed, 44 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b842bf265063
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,14 @@
+pkgbase = dendrix
+	pkgdesc = Algorithm for discovery of mutated driver pathways in cancer using only mutation data
+	pkgver = 0.3
+	pkgrel = 1
+	url = http://compbio.cs.brown.edu/projects/dendrix/
+	arch = any
+	license = MIT
+	depends = python2
+	provides = dendrix
+	source = dendrix-0.3.zip::http://compbio-research.cs.brown.edu/software/Dendrix/Dendrix_v0.3.zip
+	sha512sums = 39fd7983b34c25b5e69ed230d9f4da2795fb64057c9891afa136953855391cd8d019ac5cdfc28b69a931852b8dca381ebd01bf93c3cd7c53ab7b36f967479f7b
+
+pkgname = dendrix
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f5f7ade17238
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,30 @@
+# Maintainer: Lionel Miller <delonorm at gmail dot com>
+
+pkgname=dendrix
+pkgver=0.3
+pkgrel=1
+pkgdesc="Algorithm for discovery of mutated driver pathways in cancer using only mutation data"
+arch=('any')
+url="http://compbio.cs.brown.edu/projects/dendrix/"
+license=('MIT')
+depends=('python2')
+provides=('dendrix')
+source=("$pkgname-$pkgver.zip::http://compbio-research.cs.brown.edu/software/Dendrix/Dendrix_v$pkgver.zip")
+sha512sums=('39fd7983b34c25b5e69ed230d9f4da2795fb64057c9891afa136953855391cd8d019ac5cdfc28b69a931852b8dca381ebd01bf93c3cd7c53ab7b36f967479f7b')
+
+prepare() {
+  cd Dendrix
+
+  sed -e "s:#!/usr/bin/env python:#!/usr/bin/env python2:" \
+      -i Dendrix.py -i PermutationTestDendrix.py
+}
+
+package() {
+  cd Dendrix
+  install -Dm755 Dendrix.py "$pkgdir/usr/bin/Dendrix.py"
+  install -Dm755 PermutationTestDendrix.py "$pkgdir/usr/bin/PermutationTestDendrix.py"
+
+  install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
+  install -d "$pkgdir/usr/share/$pkgname/"
+  cp -r README.txt RELEASE_NOTES.txt example/ "$pkgdir/usr/share/$pkgname/"
+}