[lilac] updated to 1.4-3

2 files changed, 30 insertions, 4 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 0cab6c313877..5f6112c1ddf5 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,15 +1,24 @@
 pkgbase = easycodeml
 	pkgdesc = A visual tool for analysis of selection using CodeML. https://doi.org/10.1002/ece3.5015
 	pkgver = 1.4
-	pkgrel = 1
+	pkgrel = 3
 	url = https://github.com/BioEasy/EasyCodeML
 	arch = x86_64
 	license = LGPL3
 	depends = java-runtime
+	depends = paml
 	source = https://raw.githubusercontent.com/BioEasy/EasyCodeML/master/EasyCodeML.jar
+	source = https://raw.githubusercontent.com/BioEasy/EasyCodeML/master/Custom/codeml.ctl
+	source = https://raw.githubusercontent.com/BioEasy/EasyCodeML/master/Custom/default.ctl
+	source = https://github.com/BioEasy/EasyCodeML/raw/master/Preset/chi2.exe
+	source = https://github.com/BioEasy/EasyCodeML/raw/master/Preset/codeml.exe
 	source = easycodeml.desktop
 	source = EasyCodeML.png
 	sha256sums = 16eef77a21be47ac2b2cf2e04ded75dc76546a71e0ca227aa21e0418ec8caf36
+	sha256sums = 2a369a9497cf9435322dc2dad32787f0178685d483ed12aa407e7702b68071a1
+	sha256sums = b665482ad39736725dbf8b21081ddb9761c7e35c68fc93860889bd52b2429756
+	sha256sums = 3f6e8b9fcfb161d7e920bf3958b6820ad2a8cdb666b3faa4cf538d14e3ba0428
+	sha256sums = f5884da79e69c972570225a2f2562e43c47f2935b4dd858aae4789440b691adb
 	sha256sums = e20af3e0e14be4f95d634bf5c34cb35dc37edfada7d97f9c0e9dd10afa7cbf6f
 	sha256sums = 5393db9477bd071511788ea6255c49005274b4aebe792a7631eaa296ada14987
 
diff --git a/PKGBUILD b/PKGBUILD
index 98862bd9e8c3..e4a6d9f76b92 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -3,21 +3,38 @@
 
 pkgname=easycodeml
 pkgver=1.4
-pkgrel=1
+pkgrel=3
 pkgdesc="A visual tool for analysis of selection using CodeML. https://doi.org/10.1002/ece3.5015"
 arch=('x86_64')
 url="https://github.com/BioEasy/EasyCodeML"
 license=('LGPL3')
-source=("https://raw.githubusercontent.com/BioEasy/EasyCodeML/master/EasyCodeML.jar" "easycodeml.desktop" "EasyCodeML.png")
+source=("https://raw.githubusercontent.com/BioEasy/EasyCodeML/master/EasyCodeML.jar"
+	"https://raw.githubusercontent.com/BioEasy/EasyCodeML/master/Custom/codeml.ctl"
+	"https://raw.githubusercontent.com/BioEasy/EasyCodeML/master/Custom/default.ctl"
+	"https://github.com/BioEasy/EasyCodeML/raw/master/Preset/chi2.exe"
+	"https://github.com/BioEasy/EasyCodeML/raw/master/Preset/codeml.exe"
+	"easycodeml.desktop"
+	"EasyCodeML.png")
 sha256sums=('16eef77a21be47ac2b2cf2e04ded75dc76546a71e0ca227aa21e0418ec8caf36'
+            '2a369a9497cf9435322dc2dad32787f0178685d483ed12aa407e7702b68071a1'
+            'b665482ad39736725dbf8b21081ddb9761c7e35c68fc93860889bd52b2429756'
+            '3f6e8b9fcfb161d7e920bf3958b6820ad2a8cdb666b3faa4cf538d14e3ba0428'
+            'f5884da79e69c972570225a2f2562e43c47f2935b4dd858aae4789440b691adb'
             'e20af3e0e14be4f95d634bf5c34cb35dc37edfada7d97f9c0e9dd10afa7cbf6f'
             '5393db9477bd071511788ea6255c49005274b4aebe792a7631eaa296ada14987')
 depends=(
 	'java-runtime'
+	'paml'
 )
 package() {
-    install -dm755 "$pkgdir"/usr/share/{EasyCodeML,applications}
+    install -dm755 "$pkgdir"/usr/share/{EasyCodeML/{Custom,Preset,CodeMLSrc/Linux},applications}
     install -Dm 755 "$srcdir"/EasyCodeML.jar "$pkgdir"/usr/share/EasyCodeML
+    install -Dm 755 $srcdir/*.ctl "$pkgdir"/usr/share/EasyCodeML/Custom/
+for bin in chi2 codeml
+do
+    ln -s /usr/bin/$bin $pkgdir/usr/share/EasyCodeML/CodeMLSrc/Linux/$bin.exe
+    install -Dm 777 $srcdir/$bin.exe $pkgdir/usr/share/EasyCodeML/Preset/$bin.exe
+done
     install -m 755 ${srcdir}/EasyCodeML.png ${pkgdir}/usr/share/EasyCodeML/EasyCodeML.png
     install -m 755 ${srcdir}/easycodeml.desktop ${pkgdir}/usr/share/applications/easycodeml.desktop 
 }