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| author | mschubert | 2015-06-12 12:07:12 +0100 |
|---|---|---|
| committer | mschubert | 2015-06-12 12:07:12 +0100 |
| commit | 1f33dc2c86e3b73219b90c4efde21669144cbe55 (patch) | |
| tree | efa391a04f27c4c0a628d488a66beaffd6d2b619 | |
| download | aur-1f33dc2c86e3b73219b90c4efde21669144cbe55.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 19 | ||||
| -rw-r--r-- | PKGBUILD | 34 |
2 files changed, 53 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..8c1288ee185c --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,19 @@ +pkgbase = emboss + pkgdesc = A collection of molecular biology applications + pkgver = 6.6.0 + pkgrel = 1 + url = http://emboss.sourceforge.net/ + arch = x86_64 + arch = i686 + license = GPL2 + depends = gd + depends = pcre + depends = java-runtime + optdepends = libmysqlclient + optdepends = postgresql-libs + options = !libtool + source = ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz + md5sums = cc3fca80cb0618deb10fa0d29fe90e4b + +pkgname = emboss + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..a4bda9465afe --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,34 @@ +# Maintainer: Michael Schubert <mschu.dev at gmail> +# Contributor: moostik <mooostik_at_gmail.com> +# Contributor: mick elliot <micke@sfu.ca> + +pkgname=emboss +_pkgname=EMBOSS +pkgver=6.6.0 +pkgrel=1 +pkgdesc="A collection of molecular biology applications" +arch=('x86_64' 'i686') +url="http://emboss.sourceforge.net/" +depends=('gd' 'pcre' 'java-runtime') +optdepends=('libmysqlclient' 'postgresql-libs') +options=('!libtool') +license=('GPL2') +source=("ftp://emboss.open-bio.org/pub/EMBOSS/$_pkgname-$pkgver.tar.gz") +md5sums=('cc3fca80cb0618deb10fa0d29fe90e4b') + +build() { + cd "$srcdir/$_pkgname-$pkgver" + + ./configure --prefix=/usr --enable-large --with-x + + sed -i 's|$(bindir)/embossupdate|:|' Makefile + JAVA_CFLAGS="-I$JAVA_HOME/include -I$JAVA_HOME/include/linux" make +} + +package() { + cd "$srcdir/$_pkgname-$pkgver" + + make DESTDIR="$pkgdir" install + rm -f "$pkgdir/usr/include/{pcre,pcreposix}.h" +} + |