init

6 files changed, 148 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3ce32fe8d22a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,22 @@
+pkgbase = esoreflex
+	pkgdesc = EsoReflex is an environment that provides an easy and flexible way to reduce VLT/VLTI science data using the ESO pipelines.
+	pkgver = 2.11.5
+	pkgrel = 1
+	url = https://www.eso.org/sci/software/esoreflex/
+	install = esoreflex.install
+	arch = x86_64
+	license = GPL3
+	depends = java-environment
+	optdepends = python-astropy: enables interactivity with system-wide python installation
+	optdepends = python-matplotlib: enables interactivity with system-wide python installation
+	optdepends = python-wxpython: enables interactivity with system-wide python installation
+	source = https://ftp.eso.org/pub/dfs/reflex/esoreflex-2.11.5.tar.gz
+	source = esoreflex.sysusers
+	source = esoreflex.sh
+	source = esoreflex.patch
+	md5sums = 8754d013b6e9c9cef40439c7e4560b6b
+	md5sums = SKIP
+	md5sums = SKIP
+	md5sums = SKIP
+
+pkgname = esoreflex
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c441ed6f4472
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,55 @@
+# Maintainer:  Yigit Dallilar <yigit.dallilar@gmail.com>
+
+pkgname=esoreflex
+pkgver=2.11.5
+pkgrel=1
+pkgdesc="EsoReflex is an environment that provides an easy and flexible way to reduce VLT/VLTI science data using the ESO pipelines. "
+url="https://www.eso.org/sci/software/esoreflex/"
+arch=('x86_64')
+license=('GPL3')
+depends=('java-environment')
+makedepends=()
+# Note all of them needs to be installed for interactivity to work, but conda environments 
+# can also alternatively be used to set it up
+# See https://www.eso.org/sci/observing/phase2/Using_conda_w_esoreflex.html
+optdepends=('python-astropy: enables interactivity with system-wide python installation'
+            'python-matplotlib: enables interactivity with system-wide python installation'
+            'python-wxpython: enables interactivity with system-wide python installation')
+provides=()
+conflicts=()
+replaces=()
+backup=()
+options=()
+source=(https://ftp.eso.org/pub/dfs/reflex/esoreflex-${pkgver}.tar.gz
+        esoreflex.sysusers
+        esoreflex.sh
+        esoreflex.patch)
+md5sums=('8754d013b6e9c9cef40439c7e4560b6b'
+        SKIP
+        SKIP
+        SKIP)
+install=esoreflex.install
+
+prepare() {
+
+    cd ${srcdir}/${pkgname}-${pkgver}
+    patch --forward --strip=1 --input=${srcdir}/esoreflex.patch
+
+}
+
+package() {
+
+    mkdir -p ${pkgdir}/opt/esoreflex
+    cp -aR ${srcdir}/${pkgname}-${pkgver}/* ${pkgdir}/opt/esoreflex/
+	
+    install -D -m755 ${srcdir}/${pkgname}-${pkgver}/esoreflex/bin/esoreflex ${pkgdir}/usr/bin/esoreflex
+    mkdir -p ${pkgdir}/opt/esoreflex/esoreflex/python/__pycache__/
+    chmod g+w -R ${pkgdir}/opt/esoreflex/esoreflex/python/__pycache__/
+    chmod g+w -R ${pkgdir}/opt/esoreflex/build-area
+
+    install -Dm644 ${srcdir}/${pkgname}.sysusers ${pkgdir}/usr/lib/sysusers.d/${pkgname}.conf
+    install -Dm644 ${srcdir}/${pkgname}.sh ${pkgdir}/etc/profile.d/${pkgname}.sh
+
+}
+
+# vim:set ts=4 sw=4 et:
diff --git a/esoreflex.install b/esoreflex.install
new file mode 100644
index 000000000000..dba649e1fffb
--- /dev/null
+++ b/esoreflex.install
@@ -0,0 +1,26 @@
+
+post_upgrade () {
+
+    chgrp -R esoreflex /opt/esoreflex
+    
+}
+
+post_install () {
+
+	post_upgrade
+
+}
+
+post_remove () {
+
+    rm -rf /opt/esoreflex
+
+}
+
+pre_upgrade () {
+
+    post_remove
+
+}
+
+# vim:set ts=4 sw=4 et:
diff --git a/esoreflex.patch b/esoreflex.patch
new file mode 100644
index 000000000000..61e9f410d65c
--- /dev/null
+++ b/esoreflex.patch
@@ -0,0 +1,41 @@
+diff --color --unified --recursive --text esoreflex-2.11.5.orig/esoreflex/bin/esoreflex esoreflex-2.11.5.new/esoreflex/bin/esoreflex
+--- esoreflex-2.11.5.orig/esoreflex/bin/esoreflex	2022-04-05 09:26:38.333571913 -0400
++++ esoreflex-2.11.5.new/esoreflex/bin/esoreflex	2022-04-05 11:38:42.418766612 -0400
+@@ -216,12 +216,6 @@
+ # location of this launch script, if not hardcoded. Use perl if we can to
+ # resolve any symbolic links in the path. The base path is used to identify the
+ # default location of the Reflex .jar and Reflex python files.
+-ESOREFLEX_BASE=$(dirname $0)/../..
+-if command -v perl > /dev/null ; then
+-    ESOREFLEX_BASE=$(perl -MCwd=realpath -e "print realpath '$ESOREFLEX_BASE'")
+-else
+-    ESOREFLEX_BASE=$(cd "$ESOREFLEX_BASE" ; pwd)
+-fi
+ ESOREFLEX_JAR="$ESOREFLEX_BASE/esoreflex.jar"
+ 
+ # This utility function will escape all special characters of a string so that
+@@ -341,7 +335,7 @@
+ 
+ # Supply default values for various parameters in esoreflex.rc
+ JAVA_COMMAND=java
+-ESOREFLEX_WORKFLOW_PATH=~/KeplerData/workflows/MyWorkflows
++ESOREFLEX_WORKFLOW_PATH=${ESOPIPES_DIR}/share/esopipes
+ ESOREX_COMMAND=esorex
+ LOAD_ESOREX_CONFIG=""
+ LOAD_ESOREX_RECIPE_CONFIG=""
+@@ -1271,8 +1265,14 @@
+     echo "================================================================================"
+ fi
+ 
++export JAVA_COMMAND
++export ESOREFLEX_JAR
++
+ # Now execute the esoreflex Java application. Save the exit code to return it later.
+-$JAVA_COMMAND -jar "$ESOREFLEX_JAR" "$@"
++getent group esoreflex | grep -q "\b${USER}\b" &&  \
++	sg esoreflex -c '$JAVA_COMMAND -jar $ESOREFLEX_JAR '"$@"'' || \
++	{ echo "Add user ${USER} to esoreflex group"; exit; }
++
+ RESULT="$?"
+ 
+ # Cleanup the temporary directory if it was created by prepare_non_interactive.
diff --git a/esoreflex.sh b/esoreflex.sh
new file mode 100644
index 000000000000..b97c35810823
--- /dev/null
+++ b/esoreflex.sh
@@ -0,0 +1,3 @@
+
+export ESOREFLEX_BASE=/opt/esoreflex/
+
diff --git a/esoreflex.sysusers b/esoreflex.sysusers
new file mode 100644
index 000000000000..962b64d7fd4c
--- /dev/null
+++ b/esoreflex.sysusers
@@ -0,0 +1 @@
+g esoreflex - -