diff options
| author | Kuoi | 2023-03-22 13:31:21 +0800 |
|---|---|---|
| committer | Kuoi | 2023-03-22 13:31:21 +0800 |
| commit | 970a786e0abc6e963ff13433b6993d3d1e813655 (patch) | |
| tree | ac2146e0fc52f7ad9876e68b6f95da26261bb941 | |
| download | aur-970a786e0abc6e963ff13433b6993d3d1e813655.tar.gz | |
init
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 45 |
2 files changed, 62 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..5d747e5f521b --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = fermi-lite + pkgdesc = Standalone C library for assembling Illumina short reads in small regions + pkgver = 0.1.r13.g85f159e + pkgrel = 2 + url = https://github.com/lh3/fermi-lite + arch = x86_64 + license = MIT + makedepends = git + makedepends = make + makedepends = patch + depends = zlib + source = git+https://github.com/lh3/fermi-lite.git + source = 001-bwa.patch::https://github.com/lh3/fermi-lite/compare/master...walaj:fermi-lite:master.diff + sha256sums = SKIP + sha256sums = 9f77d739ad2b276344d4ee3301c41247550242c7ad26dd47088934c1341e3bda + +pkgname = fermi-lite diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..dfb5f3c86fc2 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,45 @@ +# Maintainer: PumpkinCheshire <sollyonzou at gmail dot com> + +pkgname=fermi-lite +pkgver=0.1.r13.g85f159e +pkgrel=2 +pkgdesc="Standalone C library for assembling Illumina short reads in small regions" +arch=('x86_64') +url="https://github.com/lh3/fermi-lite" +license=('MIT') +depends=('zlib') +makedepends=('git' 'make' 'patch') +source=("git+${url}.git" +"001-bwa.patch::${url}/compare/master...walaj:fermi-lite:master.diff" +) +sha256sums=('SKIP' + '9f77d739ad2b276344d4ee3301c41247550242c7ad26dd47088934c1341e3bda') + +pkgver() { + git -C ${pkgname} describe --long --tags | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g' +} + +prepare(){ + cd ${pkgname} + sed -i "s|CFLAGS=|CFLAGS=-fPIC |" Makefile + sed -i "s|^const|extern const|" rle.h + patch --strip=1 --fuzz=3 < ../001-bwa.patch +} +build() { + cd "$srcdir/${pkgname}" + make + mkdir lib + cp libfml.a lib + cd lib + ar -x libfml.a + gcc -shared -o libfml.so *.o +} + +package() { + install -Dm755 -t "${pkgdir}/usr/bin" ${srcdir}/${pkgname}/fml-asm + install -Dm644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ${pkgname}/LICENSE.txt + cd $srcdir/${pkgname} + install -Dm644 *.h -t "${pkgdir}/usr/include/${pkgname}" + install -Dm755 lib/libfml.so -t "${pkgdir}/usr/lib" + ln -s /usr/lib/libfml.so "${pkgdir}/usr/lib/libfermi-lite.so" +} |