The first release of fpocket

3 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f680b722c9f2
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,17 @@
+pkgbase = fpocket-git
+	pkgdesc = Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation
+	pkgver = 3.1.2
+	pkgrel = 1
+	url = https://github.com/Discngine/fpocket
+	arch = i686
+	arch = x86_64
+	license = MIT
+	makedepends = git
+	makedepends = patch
+	source = git+https://github.com/Discngine/fpocket.git
+	source = fpocket.patch
+	sha1sums = SKIP
+	sha1sums = 376060e821c23483effa2befb6e090d81dcc4d5e
+
+pkgname = fpocket-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..eefda00d2b1e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
+pkgname=fpocket-git
+pkgver=3.1.2
+pkgrel=1
+pkgdesc="Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation"
+arch=('i686' 'x86_64')
+license=('MIT')
+url="https://github.com/Discngine/fpocket"
+makedepends=('git' 'patch')
+source=("git+https://github.com/Discngine/fpocket.git"
+        "fpocket.patch")
+sha1sums=('SKIP'
+          '376060e821c23483effa2befb6e090d81dcc4d5e')
+
+prepare() {
+  cd ${srcdir}/fpocket
+  patch -Np0 -i "${srcdir}/fpocket.patch"
+}
+
+build() {
+  cd ${srcdir}/fpocket
+  
+  make
+}
+
+package() {
+  mkdir -p ${pkgdir}/usr/bin
+  mkdir -p ${pkgdir}/usr/share/man/man8
+
+  cd ${srcdir}/fpocket
+
+  install -Dm755 bin/fpocket ${pkgdir}/usr/bin/fpocket
+  install -Dm755 bin/dpocket ${pkgdir}/usr/bin/dpocket
+  install -Dm755 bin/tpocket ${pkgdir}/usr/bin/tpocket
+  install -Dm755 bin/mdpocket ${pkgdir}/usr/bin/mdpocket
+  install -Dm644 man/fpocket.8 ${pkgdir}/usr/share/man/man8/fpocket.8
+  install -Dm644 man/dpocket.8 ${pkgdir}/usr/share/man/man8/dpocket.8
+  install -Dm644 man/tpocket.8 ${pkgdir}/usr/share/man/man8/tpocket.8
+}
diff --git a/fpocket.patch b/fpocket.patch
new file mode 100644
index 000000000000..14dc20324eda
--- /dev/null
+++ b/fpocket.patch
@@ -0,0 +1,26 @@
+--- makefile	2018-09-14 16:37:11.552447515 +0300
++++ makefile	2018-09-14 16:35:07.558785168 +0300
+@@ -38,7 +38,7 @@
+ QCFLAGS     = -O -g -pg -ansi
+ 
+ LGSL        = -L$(PATH_GSL)lib -lgsl -lgslcblas 
+-LFLAGS	    = -lm -L$(PLUGINDIR)/$(ARCH)/molfile $(PLUGINDIR)/$(ARCH)/molfile/libmolfile_plugin.a -lnetcdf -lstdc++
++LFLAGS	    = -lm -L$(PLUGINDIR)/$(ARCH)/molfile $(PLUGINDIR)/$(ARCH)/molfile/libmolfile_plugin.a -lstdc++
+ #
+ #------------------------------------------------------------
+ # BINARIES OBJECTS 
+--- src/mdpocket.c	2018-09-14 16:37:31.845834900 +0300
++++ src/mdpocket.c	2018-09-14 16:35:21.485488676 +0300
+@@ -92,10 +92,10 @@
+     char pdb_code[350] = "";
+ 
+ 
+-    if (!strncmp(par->traj_format, "net", 3)) {
++/*    if (!strncmp(par->traj_format, "net", 3)) {
+         molfile_netcdfplugin_init();
+         molfile_netcdfplugin_register(NULL, register_cb);
+-    }
++    }*/
+     if (!strncmp(par->traj_format, "dcd", 3)) {
+         molfile_dcdplugin_init();
+         molfile_dcdplugin_register(NULL, register_cb);