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| author | Guoyi Zhang | 2024-08-20 00:47:14 +1000 |
|---|---|---|
| committer | Guoyi Zhang | 2024-08-20 00:47:14 +1000 |
| commit | 674176e50e83f50c6a39c5df05f8e1dc16335452 (patch) | |
| tree | da95110aad7f11325bf15abdddd163a21fbe0eae | |
| download | aur-674176e50e83f50c6a39c5df05f8e1dc16335452.tar.gz | |
init
| -rw-r--r-- | .SRCINFO | 23 | ||||
| -rw-r--r-- | PKGBUILD | 26 |
2 files changed, 49 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..fa761bad1bed --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,23 @@ +pkgbase = getorganelle + pkgdesc = Get organelle genomes from genome skimming data https://doi.org/10.1186/s13059-020-02154-5 + pkgver = 1.7.7.1 + pkgrel = 0 + url = https://github.com/Kinggerm/GetOrganelle + arch = any + license = GPL-3.0-or-later + makedepends = python-setuptools + depends = python + depends = perl + depends = pigz + depends = spades + depends = onetbb + depends = bowtie2 + depends = blast+ + depends = python-numpy + depends = python-scipy + depends = python-sympy + depends = python-requests + source = getorganelle-1.7.7.1.tar.gz::https://github.com/Kinggerm/GetOrganelle/archive/1.7.7.1.tar.gz + sha256sums = cf8e14766de43967182be839de20c9d1709b60fae38a0b3d175742dfad7a5d44 + +pkgname = getorganelle diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..ed590fcb3dc8 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,26 @@ +# Maintainer: <Guoyi Zhang> <myname at malacology dot net> +pkgname=getorganelle +pkgver=1.7.7.1 +pkgrel=0 +pkgdesc="Get organelle genomes from genome skimming data \ + https://doi.org/10.1186/s13059-020-02154-5" +arch=('any') +url="https://github.com/Kinggerm/GetOrganelle" +license=('GPL-3.0-or-later') +depends=('python' 'perl' 'pigz' 'spades' 'onetbb' 'bowtie2' 'blast+' 'python-numpy' 'python-scipy' 'python-sympy' 'python-requests') +makedepends=('python-setuptools') +source=("$pkgname-$pkgver.tar.gz::$url/archive/$pkgver.tar.gz") +sha256sums=('cf8e14766de43967182be839de20c9d1709b60fae38a0b3d175742dfad7a5d44') + +build() { + cd "$srcdir/GetOrganelle-$pkgver" + #python -m pip install . --no-deps --no-build-isolation -vvv --root="$pkgdir" --optimize=1 + python setup.py build +} + +package() { + cd "$srcdir/GetOrganelle-$pkgver" + #install -Dm755 -t "$pkgdir/usr/bin" get_organelle_from_reads.py get_organelle_from_assembly.py slim_graph.py + python setup.py install --root="$pkgdir" --optimize=1 +} + |