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| author | bipin kumar | 2023-07-23 16:22:36 +0530 |
|---|---|---|
| committer | bipin kumar | 2023-07-23 16:22:36 +0530 |
| commit | b18046b5e9f2ea0716eba8a3ec138ea51916b5f0 (patch) | |
| tree | 2a355dcb0cf4f0105daa8fa055e836966d3af3b6 | |
| download | aur-b18046b5e9f2ea0716eba8a3ec138ea51916b5f0.tar.gz | |
hifiasm: version 0.19.5
| -rw-r--r-- | .SRCINFO | 16 | ||||
| -rw-r--r-- | PKGBUILD | 36 |
2 files changed, 52 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..dcbd090baea5 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,16 @@ +pkgbase = hifiasm + pkgdesc = Haplotype-resolved de novo assembler for PacBio Hifi reads. https://doi.org/10.1038/s41592-020-01056-5 + pkgver = 0.19.5 + pkgrel = 1 + url = https://github.com/chhylp123/hifiasm + arch = x86_64 + license = MIT + depends = glibc + depends = gcc-libs + depends = zlib + source = hifiasm-0.19.5.tar.gz::https://github.com/chhylp123/hifiasm/archive/refs/tags/0.19.5.tar.gz + source = LDFLAG.patch::https://patch-diff.githubusercontent.com/raw/chhylp123/hifiasm/pull/484.patch + b2sums = 1104508456996fb43ddf05d2c43ef49eb252a9be08f8ff08ad4577a4a89e2585b1d838ab10de45125937be4ae7e740a96fcfc16189cc738abcb43c645ff1d0aa + b2sums = 6fa4df620ac4f10991702edaf155982ad7730d09caf69774403a1843f0668d00c9bdbe1c9c8ba20c56f7b2b214292da8184ed665a8e0812a0aa0119c20ae70fc + +pkgname = hifiasm diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..865512e80ecc --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,36 @@ +# Maintainer: bipin Kumar <kbipinkumar@pm.me> + +pkgname=hifiasm +pkgver=0.19.5 +pkgrel=1 +pkgdesc="Haplotype-resolved de novo assembler for PacBio Hifi reads. https://doi.org/10.1038/s41592-020-01056-5" +arch=(x86_64) +url="https://github.com/chhylp123/hifiasm" +license=('MIT') +depends=('glibc' 'gcc-libs' 'zlib') +source=( + "$pkgname-$pkgver.tar.gz::"https://github.com/chhylp123/hifiasm/archive/refs/tags/${pkgver}.tar.gz"" + "LDFLAG.patch::"https://patch-diff.githubusercontent.com/raw/chhylp123/hifiasm/pull/484.patch"" + ) +b2sums=('1104508456996fb43ddf05d2c43ef49eb252a9be08f8ff08ad4577a4a89e2585b1d838ab10de45125937be4ae7e740a96fcfc16189cc738abcb43c645ff1d0aa' + '6fa4df620ac4f10991702edaf155982ad7730d09caf69774403a1843f0668d00c9bdbe1c9c8ba20c56f7b2b214292da8184ed665a8e0812a0aa0119c20ae70fc') + +prepare() { + cd ${pkgname}-${pkgver} + patch -p1 < ${srcdir}/LDFLAG.patch + +} + +build() { + cd ${pkgname}-${pkgver} + export LDFLAGS="-Wl,-z,relro,-z,now" + make +} + +package() { + cd ${pkgname}-${pkgver} + install -Dm755 hifiasm "$pkgdir"/usr/bin/hifiasm + install -Dm644 LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" + mkdir -p ${pkgdir}/usr/share/man/man1/ + cp hifiasm.1 ${pkgdir}/usr/share/man/man1/hifiasm.1 +} |