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| author | Philipp A | 2018-02-01 11:14:33 +0100 |
|---|---|---|
| committer | Philipp A | 2018-02-01 11:14:33 +0100 |
| commit | f0be65782d10b087a8e60ba980d669846dff5ae3 (patch) | |
| tree | f535a3d2c939f80c20e6a8d046644fcda3690288 | |
| download | aur-f0be65782d10b087a8e60ba980d669846dff5ae3.tar.gz | |
initial commit
| -rw-r--r-- | .SRCINFO | 13 | ||||
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | PKGBUILD | 21 |
3 files changed, 38 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..8991d19b8c75 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,13 @@ +pkgbase = hisat2 + pkgdesc = A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes + pkgver = 2.1.0 + pkgrel = 1 + url = https://ccb.jhu.edu/software/hisat2 + arch = i686 + arch = x86_64 + license = GPLv3 + source = ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip + sha256sums = 89a276eed1fc07414b1601947bc9466bdeb50e8f148ad42074186fe39a1ee781 + +pkgname = hisat2 + diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..1d41ea0663a1 --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +/pkg/ +/src/ +/*.pkg.tar.xz +/*.zip diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..ef3209d37db9 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,21 @@ +pkgname=hisat2 +pkgver=2.1.0 +pkgrel=1 +pkgdesc='A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes' +url="https://ccb.jhu.edu/software/$pkgname" +license=(GPLv3) +arch=(i686 x86_64) +source=("ftp://ftp.ccb.jhu.edu/pub/infphilo/$pkgname/downloads/$pkgname-$pkgver-source.zip") +sha256sums=('89a276eed1fc07414b1601947bc9466bdeb50e8f148ad42074186fe39a1ee781') + +build() { + cd "$srcdir/$pkgname-$pkgver" + make +} + +package() { + cd "$srcdir/$pkgname-$pkgver" + for bin in hisat2 hisat2-*; do + install -Dm755 $bin "$pkgdir/usr/bin/$bin" + done +} |