A combined hmmer version 2 and 3 package, since upstream made them different things and downstream uses both.

2 files changed, 73 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..ee105e33b50e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,25 @@
+pkgbase = hmmer
+	pkgdesc = Profile hidden Markov models (HMMs) for database searching using consensus sequences containing the version 2 and 3 implementations.
+	pkgver = 3
+	pkgrel = 2
+	url = http://hmmer.org/
+	arch = i686
+	arch = x86_64
+	license = GPL
+	makedepends = glibc
+	makedepends = make
+	makedepends = bash
+	makedepends = perl
+	makedepends = perl-perl4-corelibs
+	depends = glibc
+	provides = hmmer
+	provides = hmmer2
+	conflicts = hmmer
+	conflicts = hmmer2
+	source = http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz
+	source = http://eddylab.org/software/hmmer/2.4i/hmmer-2.4i.tar.gz
+	md5sums = c8c141018bc0ccd7fc37b33f2b945d5f
+	md5sums = dab234c87e026ac1de942450750acd20
+
+pkgname = hmmer
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c7755ee7e527
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Josh Marshall <jrmarsha@mtu.edu>
+# Contributor: Michael Schubert <mschu.dev at gmail>
+# Contributor: Damir Perisa <damir.perisa@bluewin.ch>
+# Contributor: Thomas Dziedzic < gostrc at gmail >
+
+pkgname=hmmer
+pkgver=3
+pkgrel=2
+_hmmer3_pkgver=3.1b2
+_hmmer2_pkgver=2.4i
+pkgdesc="Profile hidden Markov models (HMMs) for database searching using consensus sequences containing the version 2 and 3 implementations."
+arch=('i686' 'x86_64')
+license=('GPL')
+url="http://hmmer.org/"
+depends=('glibc')
+makedepends=('glibc' 'make' 'bash' 'perl' 'perl-perl4-corelibs')
+provides=('hmmer' 'hmmer2')
+conflicts=('hmmer' 'hmmer2')
+source=("http://eddylab.org/software/hmmer3/$_hmmer3_pkgver/hmmer-$_hmmer3_pkgver.tar.gz"
+        "http://eddylab.org/software/hmmer/$_hmmer2_pkgver/hmmer-$_hmmer2_pkgver.tar.gz")
+md5sums=('c8c141018bc0ccd7fc37b33f2b945d5f'
+         'dab234c87e026ac1de942450750acd20')
+
+build() {
+  cd "$pkgname-$_hmmer2_pkgver"
+  ./configure --prefix=/usr --program-suffix=2 --docdir=/usr/share/doc/hmmer2
+  make
+
+  cd "../$pkgname-$_hmmer3_pkgver"
+  ./configure --prefix=/usr --docdir=/usr/share/doc/hmmer
+  make
+}
+
+check() {
+  cd "$pkgname-$_hmmer2_pkgver"
+  make check  
+
+  cd "../$pkgname-$_hmmer3_pkgver"
+  make check
+}
+
+package() {
+  cd "$pkgname-$_hmmer2_pkgver"
+  make prefix="$pkgdir/usr" install
+
+  cd "../$pkgname-$_hmmer3_pkgver"
+  make prefix="$pkgdir/usr" install
+}