Initial import

2 files changed, 63 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..b0896db2b64c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,17 @@
+pkgbase = htslib
+	pkgdesc = library for high-throughput sequencing data formats
+	pkgver = 1.2.1
+	pkgrel = 2
+	url = https://github.com/samtools/htslib
+	arch = i686
+	arch = x86_64
+	license = custom
+	depends = zlib
+	provides = tabix
+	conflicts = tabix
+	replaces = tabix
+	source = htslib-1.2.1.tar.gz::https://github.com/samtools/htslib/archive/1.2.1.tar.gz
+	md5sums = 81f5f1aa17a188a6b6250ca67d83384d
+
+pkgname = htslib
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0d2ba1cd8137
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
+
+pkgname=htslib
+pkgver=1.2.1
+pkgrel=2
+pkgdesc="library for high-throughput sequencing data formats"
+arch=('i686' 'x86_64')
+url="https://github.com/samtools/htslib"
+license=('custom')
+depends=('zlib')
+provides=('tabix')
+replaces=('tabix')
+conflicts=('tabix')
+source=($pkgname-$pkgver.tar.gz::https://github.com/samtools/htslib/archive/$pkgver.tar.gz)
+md5sums=('81f5f1aa17a188a6b6250ca67d83384d')
+
+prepare() {
+  cd $srcdir/$pkgname-$pkgver
+
+  autoreconf -i
+}
+
+build() {
+  cd $srcdir/$pkgname-$pkgver
+
+  ./configure --prefix=/usr
+
+  make
+}
+
+check() {
+  cd $srcdir/$pkgname-$pkgver
+
+  make check
+}
+
+package() {
+  cd $srcdir/$pkgname-$pkgver
+
+  make DESTDIR=$pkgdir install
+
+  install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
+
+  # htslib shared library comes installed as 0644
+  chmod +x $pkgdir/usr/lib/libhts.so.*.*.*
+}