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authorRhinoceros2019-04-24 20:12:48 +1000
committerRhinoceros2019-04-24 20:16:40 +1000
commit62702d717fa320acf16b5b3921477a03af0348e9 (patch)
tree0577912e86eca94806df969edfb835e2824cb731
parent8081343a49a814feba495986903bea51e582c6d8 (diff)
downloadaur-62702d717fa320acf16b5b3921477a03af0348e9.tar.gz
Update to 2.5.2-1
* Upstream changelog: "Fixed issue with loading indexed files from AWS signed URLs." * Fixed licence
-rw-r--r--.SRCINFO10
-rw-r--r--PKGBUILD16
2 files changed, 16 insertions, 10 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 75def8370f04..49a1c8825794 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,23 +1,25 @@
pkgbase = igv
pkgdesc = High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute.
- pkgver = 2.5.1
+ pkgver = 2.5.2
pkgrel = 1
url = http://www.broadinstitute.org/software/igv/home
arch = any
- license = LGPL
+ license = MIT
depends = jre-openjdk
depends = archlinux-java-run
depends = sh
- source = http://data.broadinstitute.org/igv/projects/downloads/2.5/IGV_Linux_2.5.1.zip
+ source = http://data.broadinstitute.org/igv/projects/downloads/2.5/IGV_Linux_2.5.2.zip
source = igv.sh
source = igv_hidpi.sh
source = igv.desktop
source = igv_hidpi.desktop
- sha512sums = 7933b20d7e06b9c50f8bae9ecc8dd0e9723b887576bb2ccf50358cc53e7ffac19990a79f2ee4f8e6e8b7dbc7e298c037ce8e9781cc8179c7ca7ef1f5ac985d41
+ source = https://raw.githubusercontent.com/igvteam/igv/master/license.txt
+ sha512sums = d7f9b4129c63a74cb8b69011f8a5e5341e640bc3715f482af771b27426653fd1eb40efc1e103bcec58f5abc281acab7788d252196e2c73ff21f9f32a49cc5f7e
sha512sums = 70de493d5188d6eedbd0bf7c74d41ce4829efab75e3a79b56f998326c209d0184f5d3624d6b85d01ad93f0462e785c314322ef4a9260ead6d747f1791ecbe649
sha512sums = 60c9c8c6f66259a4edafd1d58d1f1ebcda4450f7620d4c0fc987d5875c2fd531bc2a3159fcdb77975bf07002036e3544f4d301a31d1085ab24d576eea1f8adcb
sha512sums = c6bd4fc8bb7e43ee0fe9a4709e716d015c678bdd8bcb897876c267ec48441e2383aebb26b80457d2238f79546537af3409aa698544dc0043ff2c921f18126662
sha512sums = 0d52cbd6adc2bf36f8b80acdb6d72b30d52e920b301e7af75ddee8d942c9f3467f7aa98129984ee269c6aaaacc703fb054ba2917e0d7dbce5620050623383e5b
+ sha512sums = 4573a4409ce2754de2a2cf42778cfed9071858f48958f0ee41723cf3ca6dd492df4f395ddf160a41834ad044e8964e21c8e47cdad6fdfe27031a4ea3201a7a39
pkgname = igv
diff --git a/PKGBUILD b/PKGBUILD
index e94a13e22055..27ee890b3134 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,15 +1,16 @@
# Contributor: Decrypted Epsilon <decrypted.epsilon@gmail.com>
# Contributor: Stefan Husmann <stefan-husmann@t-online.de>
# Maintainer: Piotr Balwierz <parseByHuman(surname at email_service_of_google)>
+# Co-maintainer: Rhinoceros <https://aur.archlinux.org/account/rhinoceros>
pkgname=igv
-pkgver=2.5.1
+pkgver=2.5.2
_pkgver=${pkgver//_/-} # currently not needed
pkgrel=1
pkgdesc="High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute."
arch=('any')
url="http://www.broadinstitute.org/software/igv/home"
-license=('LGPL')
+license=('MIT')
depends=('jre-openjdk' 'archlinux-java-run' 'sh')
#"igv-$pkgver.tar.gz::https://github.com/igvteam/igv/archive/v$pkgver.tar.gz"
source=("http://data.broadinstitute.org/igv/projects/downloads/2.5/IGV_Linux_$pkgver.zip"
@@ -17,19 +18,22 @@ source=("http://data.broadinstitute.org/igv/projects/downloads/2.5/IGV_Linux_$pk
"$pkgname.sh"
"igv_hidpi.sh"
"$pkgname.desktop"
- "igv_hidpi.desktop")
-sha512sums=('7933b20d7e06b9c50f8bae9ecc8dd0e9723b887576bb2ccf50358cc53e7ffac19990a79f2ee4f8e6e8b7dbc7e298c037ce8e9781cc8179c7ca7ef1f5ac985d41'
+ "igv_hidpi.desktop"
+ "https://raw.githubusercontent.com/igvteam/igv/master/license.txt")
+sha512sums=('d7f9b4129c63a74cb8b69011f8a5e5341e640bc3715f482af771b27426653fd1eb40efc1e103bcec58f5abc281acab7788d252196e2c73ff21f9f32a49cc5f7e'
#'e71a0dc70c717b3db00268632500b5723b8cddb1ecfbd8ce48b77ffad59bf93a8d275cc5ebd18b9eb1025200438ac55ec348def343b1b5f72a2c982b5dc4cc90'
'70de493d5188d6eedbd0bf7c74d41ce4829efab75e3a79b56f998326c209d0184f5d3624d6b85d01ad93f0462e785c314322ef4a9260ead6d747f1791ecbe649'
'60c9c8c6f66259a4edafd1d58d1f1ebcda4450f7620d4c0fc987d5875c2fd531bc2a3159fcdb77975bf07002036e3544f4d301a31d1085ab24d576eea1f8adcb'
'c6bd4fc8bb7e43ee0fe9a4709e716d015c678bdd8bcb897876c267ec48441e2383aebb26b80457d2238f79546537af3409aa698544dc0043ff2c921f18126662'
- '0d52cbd6adc2bf36f8b80acdb6d72b30d52e920b301e7af75ddee8d942c9f3467f7aa98129984ee269c6aaaacc703fb054ba2917e0d7dbce5620050623383e5b')
+ '0d52cbd6adc2bf36f8b80acdb6d72b30d52e920b301e7af75ddee8d942c9f3467f7aa98129984ee269c6aaaacc703fb054ba2917e0d7dbce5620050623383e5b'
+ '4573a4409ce2754de2a2cf42778cfed9071858f48958f0ee41723cf3ca6dd492df4f395ddf160a41834ad044e8964e21c8e47cdad6fdfe27031a4ea3201a7a39')
-package() {
+package() {
install -Dm755 $pkgname.sh "$pkgdir"/usr/bin/$pkgname
install -Dm755 "$pkgname"_hidpi.sh "$pkgdir"/usr/bin/"$pkgname"_hidpi
install -Dm644 $pkgname.desktop "$pkgdir"/usr/share/applications/$pkgname.desktop
install -Dm644 "$pkgname"_hidpi.desktop "$pkgdir"/usr/share/applications/"$pkgname"_hidpi.desktop
+ install -Dm644 license.txt "${pkgdir}/usr/share/licenses/${pkgname}"
cd IGV_Linux_${_pkgver}
install -Dm644 IGV_64.png "$pkgdir"/usr/share/pixmaps/$pkgname.png
install -Dm644 igv.args "$pkgdir"/usr/share/java/$pkgname/igv.args