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author | Rhinoceros | 2024-02-12 10:09:05 +1100 |
---|---|---|
committer | Rhinoceros | 2024-02-12 10:09:05 +1100 |
commit | a9f6135cc63d9de96b5f26919fd3092e5c46f225 (patch) | |
tree | e9b1b0d961ac0fdec4ca9a99b9048565e1a52afc | |
parent | 38f422bb38db4db9d02358a51c06e20d4037db48 (diff) | |
download | aur-a9f6135cc63d9de96b5f26919fd3092e5c46f225.tar.gz |
Update to 2.17.2-1
* Github not updated, so use old licence and icon.
* Upstream changlog:
* Bug fixes
* BAM/CRAM files with malformed SA tags were not viewable.
* Validation of base modification tag (MM) was sometimes incorrect for reverse strand alignments. GitHub issue #1476.
* The alignment track "copy clipped sequence" menu item incorrectly copied reverse complement sequence for reverse strand alignments. GitHub issue #1487.
-rw-r--r-- | .SRCINFO | 6 | ||||
-rw-r--r-- | PKGBUILD | 9 |
2 files changed, 8 insertions, 7 deletions
@@ -1,6 +1,6 @@ pkgbase = igv pkgdesc = High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute. - pkgver = 2.17.1 + pkgver = 2.17.2 pkgrel = 1 url = http://www.broadinstitute.org/software/igv/home arch = any @@ -8,14 +8,14 @@ pkgbase = igv depends = jre17-openjdk depends = archlinux-java-run depends = sh - source = https://data.broadinstitute.org/igv/projects/downloads/2.17/IGV_Linux_2.17.1_WithJava.zip + source = https://data.broadinstitute.org/igv/projects/downloads/2.17/IGV_Linux_2.17.2_WithJava.zip source = igv.sh source = igv_hidpi.sh source = igv.desktop source = igv_hidpi.desktop source = igv-license-2023.txt::https://raw.githubusercontent.com/igvteam/igv/v2.17.1/license.txt source = https://raw.githubusercontent.com/igvteam/igv/v2.17.1/docs/web/IGV_64.png - sha512sums = 78976bc1c6f967c920c9c6d00ed2a36407c35b4c0322056c1bf3e21df22b9f56d0f3caa8abe9e6058df77a05a4a40ea96bc9894c328748f0aeb11c3ba2dfc82f + sha512sums = 16b945b42f9dd34971bedd09b97c6984e680b4bd67e86a1437acbb6e2a3b12a1d1a367a262471bee1c702461fd020de604a63e1d367a7cbfefcf026664739c4d sha512sums = 9c81d153e90766131c8ad209c8d84369dc6a80cf8e993e3ae49cc19ab4a6be8a9d9570773f92ad3ba971eb21fee09b2d63b9eb78e773af4e57feff3a985fa501 sha512sums = 283bd4fa4fc2e69c9083299f6d015003e0687fc252d05aad54b66e1f1111225ac7f97ed00e57b93510d65156dcd04b86c2574521ae3141192908b78f0a864608 sha512sums = 668b6dc6621415298af2b1b57c7bc4cca5be5fd45c189d14bc90cb0e5d992b53eda806a058d1920b96451c0f441b8670931fad0382c4568498b9ba6e81f5d263 @@ -4,7 +4,8 @@ # Co-maintainer: Rhinoceros <https://aur.archlinux.org/account/rhinoceros> pkgname=igv -pkgver=2.17.1 +pkgver=2.17.2 +_github_pkgver=2.17.1 minor_pkgver=$(<<<$pkgver sed -E 's/^([0-9]+\.[0-9]+)\..*/\1/') _pkgver=${pkgver//_/-} # currently not needed pkgrel=1 @@ -19,9 +20,9 @@ source=("https://data.broadinstitute.org/igv/projects/downloads/${minor_pkgver}/ "igv_hidpi.sh" "$pkgname.desktop" "igv_hidpi.desktop" - "${pkgname}-license-2023.txt::https://raw.githubusercontent.com/igvteam/igv/v${pkgver}/license.txt" - "https://raw.githubusercontent.com/igvteam/igv/v${pkgver}/docs/web/IGV_64.png") -sha512sums=('78976bc1c6f967c920c9c6d00ed2a36407c35b4c0322056c1bf3e21df22b9f56d0f3caa8abe9e6058df77a05a4a40ea96bc9894c328748f0aeb11c3ba2dfc82f' + "${pkgname}-license-2023.txt::https://raw.githubusercontent.com/igvteam/igv/v${_github_pkgver}/license.txt" + "https://raw.githubusercontent.com/igvteam/igv/v${_github_pkgver}/docs/web/IGV_64.png") +sha512sums=('16b945b42f9dd34971bedd09b97c6984e680b4bd67e86a1437acbb6e2a3b12a1d1a367a262471bee1c702461fd020de604a63e1d367a7cbfefcf026664739c4d' '9c81d153e90766131c8ad209c8d84369dc6a80cf8e993e3ae49cc19ab4a6be8a9d9570773f92ad3ba971eb21fee09b2d63b9eb78e773af4e57feff3a985fa501' '283bd4fa4fc2e69c9083299f6d015003e0687fc252d05aad54b66e1f1111225ac7f97ed00e57b93510d65156dcd04b86c2574521ae3141192908b78f0a864608' '668b6dc6621415298af2b1b57c7bc4cca5be5fd45c189d14bc90cb0e5d992b53eda806a058d1920b96451c0f441b8670931fad0382c4568498b9ba6e81f5d263' |