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authorRhinoceros2024-02-12 10:09:05 +1100
committerRhinoceros2024-02-12 10:09:05 +1100
commita9f6135cc63d9de96b5f26919fd3092e5c46f225 (patch)
treee9b1b0d961ac0fdec4ca9a99b9048565e1a52afc
parent38f422bb38db4db9d02358a51c06e20d4037db48 (diff)
downloadaur-a9f6135cc63d9de96b5f26919fd3092e5c46f225.tar.gz
Update to 2.17.2-1
* Github not updated, so use old licence and icon. * Upstream changlog: * Bug fixes * BAM/CRAM files with malformed SA tags were not viewable. * Validation of base modification tag (MM) was sometimes incorrect for reverse strand alignments. GitHub issue #1476. * The alignment track "copy clipped sequence" menu item incorrectly copied reverse complement sequence for reverse strand alignments. GitHub issue #1487.
-rw-r--r--.SRCINFO6
-rw-r--r--PKGBUILD9
2 files changed, 8 insertions, 7 deletions
diff --git a/.SRCINFO b/.SRCINFO
index b1d44c86b001..fceab0fbbe20 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = igv
pkgdesc = High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute.
- pkgver = 2.17.1
+ pkgver = 2.17.2
pkgrel = 1
url = http://www.broadinstitute.org/software/igv/home
arch = any
@@ -8,14 +8,14 @@ pkgbase = igv
depends = jre17-openjdk
depends = archlinux-java-run
depends = sh
- source = https://data.broadinstitute.org/igv/projects/downloads/2.17/IGV_Linux_2.17.1_WithJava.zip
+ source = https://data.broadinstitute.org/igv/projects/downloads/2.17/IGV_Linux_2.17.2_WithJava.zip
source = igv.sh
source = igv_hidpi.sh
source = igv.desktop
source = igv_hidpi.desktop
source = igv-license-2023.txt::https://raw.githubusercontent.com/igvteam/igv/v2.17.1/license.txt
source = https://raw.githubusercontent.com/igvteam/igv/v2.17.1/docs/web/IGV_64.png
- sha512sums = 78976bc1c6f967c920c9c6d00ed2a36407c35b4c0322056c1bf3e21df22b9f56d0f3caa8abe9e6058df77a05a4a40ea96bc9894c328748f0aeb11c3ba2dfc82f
+ sha512sums = 16b945b42f9dd34971bedd09b97c6984e680b4bd67e86a1437acbb6e2a3b12a1d1a367a262471bee1c702461fd020de604a63e1d367a7cbfefcf026664739c4d
sha512sums = 9c81d153e90766131c8ad209c8d84369dc6a80cf8e993e3ae49cc19ab4a6be8a9d9570773f92ad3ba971eb21fee09b2d63b9eb78e773af4e57feff3a985fa501
sha512sums = 283bd4fa4fc2e69c9083299f6d015003e0687fc252d05aad54b66e1f1111225ac7f97ed00e57b93510d65156dcd04b86c2574521ae3141192908b78f0a864608
sha512sums = 668b6dc6621415298af2b1b57c7bc4cca5be5fd45c189d14bc90cb0e5d992b53eda806a058d1920b96451c0f441b8670931fad0382c4568498b9ba6e81f5d263
diff --git a/PKGBUILD b/PKGBUILD
index 8540ce9c3e5c..65a662ddc4d2 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -4,7 +4,8 @@
# Co-maintainer: Rhinoceros <https://aur.archlinux.org/account/rhinoceros>
pkgname=igv
-pkgver=2.17.1
+pkgver=2.17.2
+_github_pkgver=2.17.1
minor_pkgver=$(<<<$pkgver sed -E 's/^([0-9]+\.[0-9]+)\..*/\1/')
_pkgver=${pkgver//_/-} # currently not needed
pkgrel=1
@@ -19,9 +20,9 @@ source=("https://data.broadinstitute.org/igv/projects/downloads/${minor_pkgver}/
"igv_hidpi.sh"
"$pkgname.desktop"
"igv_hidpi.desktop"
- "${pkgname}-license-2023.txt::https://raw.githubusercontent.com/igvteam/igv/v${pkgver}/license.txt"
- "https://raw.githubusercontent.com/igvteam/igv/v${pkgver}/docs/web/IGV_64.png")
-sha512sums=('78976bc1c6f967c920c9c6d00ed2a36407c35b4c0322056c1bf3e21df22b9f56d0f3caa8abe9e6058df77a05a4a40ea96bc9894c328748f0aeb11c3ba2dfc82f'
+ "${pkgname}-license-2023.txt::https://raw.githubusercontent.com/igvteam/igv/v${_github_pkgver}/license.txt"
+ "https://raw.githubusercontent.com/igvteam/igv/v${_github_pkgver}/docs/web/IGV_64.png")
+sha512sums=('16b945b42f9dd34971bedd09b97c6984e680b4bd67e86a1437acbb6e2a3b12a1d1a367a262471bee1c702461fd020de604a63e1d367a7cbfefcf026664739c4d'
'9c81d153e90766131c8ad209c8d84369dc6a80cf8e993e3ae49cc19ab4a6be8a9d9570773f92ad3ba971eb21fee09b2d63b9eb78e773af4e57feff3a985fa501'
'283bd4fa4fc2e69c9083299f6d015003e0687fc252d05aad54b66e1f1111225ac7f97ed00e57b93510d65156dcd04b86c2574521ae3141192908b78f0a864608'
'668b6dc6621415298af2b1b57c7bc4cca5be5fd45c189d14bc90cb0e5d992b53eda806a058d1920b96451c0f441b8670931fad0382c4568498b9ba6e81f5d263'