diff options
author | Rhinoceros | 2021-12-22 10:11:50 +1100 |
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committer | Rhinoceros | 2021-12-22 10:11:50 +1100 |
commit | eb2eab1173109aa510b87799aa9e9ccacb5ba354 (patch) | |
tree | 3a532b775e27a3c83ca9bd46703ddf3c147e54ad | |
parent | 6337fc335fd299d89f185a7480b9716924376d77 (diff) | |
download | aur-eb2eab1173109aa510b87799aa9e9ccacb5ba354.tar.gz |
Update to 2.11.9-1
* Upstream changelog:
This release includes the following updates:
The Log4j dependency has been removed from IGV and replaced with java.util.logging. Note, if you have customized Log4j settings in previous versions of IGV, these customized settings are now ignored. Open an issue in the IGV GitHub repo if you need customized log settings.
Loading of BAM files has been optimized to alleviate bottlenecks affecting large 3rd gen seqencing files and very deep coverage files.
The function to Move the IGV Directory, which is invoked from View > Preferences > Advanced, now moves the IGV directory to the target directory, rather than moving the contents of the IGV directory to the target directory.
-rw-r--r-- | .SRCINFO | 8 | ||||
-rw-r--r-- | PKGBUILD | 4 |
2 files changed, 6 insertions, 6 deletions
@@ -1,6 +1,6 @@ pkgbase = igv pkgdesc = High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute. - pkgver = 2.11.7 + pkgver = 2.11.9 pkgrel = 1 url = http://www.broadinstitute.org/software/igv/home arch = any @@ -8,14 +8,14 @@ pkgbase = igv depends = jre11-openjdk depends = archlinux-java-run depends = sh - source = https://data.broadinstitute.org/igv/projects/downloads/2.11/IGV_Linux_2.11.7_WithJava.zip + source = https://data.broadinstitute.org/igv/projects/downloads/2.11/IGV_Linux_2.11.9_WithJava.zip source = igv.sh source = igv_hidpi.sh source = igv.desktop source = igv_hidpi.desktop source = igv-license-2020.txt::https://raw.githubusercontent.com/igvteam/igv/master/license.txt - source = https://raw.githubusercontent.com/igvteam/igv/v2.11.7/test/web/IGV_64.png - sha512sums = c89685494f31ec0eb61ecfa60938805aa4c8e2ce43e2623981f95c753430ae82a9ff440f8618701e4c8ba1fcf9a317adf75ae0f5db306237bedd3a146a2f981c + source = https://raw.githubusercontent.com/igvteam/igv/v2.11.9/test/web/IGV_64.png + sha512sums = 794d44192ebf2687bbbb7e171d40570988b07980ebd72c26f72683e98bd626584fc909ff7800134b909a9e99fce10b27908befbcc90b528fb5d7e94c59ee68ab sha512sums = 70de493d5188d6eedbd0bf7c74d41ce4829efab75e3a79b56f998326c209d0184f5d3624d6b85d01ad93f0462e785c314322ef4a9260ead6d747f1791ecbe649 sha512sums = 60c9c8c6f66259a4edafd1d58d1f1ebcda4450f7620d4c0fc987d5875c2fd531bc2a3159fcdb77975bf07002036e3544f4d301a31d1085ab24d576eea1f8adcb sha512sums = c6bd4fc8bb7e43ee0fe9a4709e716d015c678bdd8bcb897876c267ec48441e2383aebb26b80457d2238f79546537af3409aa698544dc0043ff2c921f18126662 @@ -4,7 +4,7 @@ # Co-maintainer: Rhinoceros <https://aur.archlinux.org/account/rhinoceros> pkgname=igv -pkgver=2.11.7 +pkgver=2.11.9 minor_pkgver=$(<<<$pkgver sed -E 's/^([0-9]+\.[0-9]+)\..*/\1/') _pkgver=${pkgver//_/-} # currently not needed pkgrel=1 @@ -21,7 +21,7 @@ source=("https://data.broadinstitute.org/igv/projects/downloads/${minor_pkgver}/ "igv_hidpi.desktop" "${pkgname}-license-2020.txt::https://raw.githubusercontent.com/igvteam/igv/master/license.txt" "https://raw.githubusercontent.com/igvteam/igv/v${pkgver}/test/web/IGV_64.png") -sha512sums=('c89685494f31ec0eb61ecfa60938805aa4c8e2ce43e2623981f95c753430ae82a9ff440f8618701e4c8ba1fcf9a317adf75ae0f5db306237bedd3a146a2f981c' +sha512sums=('794d44192ebf2687bbbb7e171d40570988b07980ebd72c26f72683e98bd626584fc909ff7800134b909a9e99fce10b27908befbcc90b528fb5d7e94c59ee68ab' '70de493d5188d6eedbd0bf7c74d41ce4829efab75e3a79b56f998326c209d0184f5d3624d6b85d01ad93f0462e785c314322ef4a9260ead6d747f1791ecbe649' '60c9c8c6f66259a4edafd1d58d1f1ebcda4450f7620d4c0fc987d5875c2fd531bc2a3159fcdb77975bf07002036e3544f4d301a31d1085ab24d576eea1f8adcb' 'c6bd4fc8bb7e43ee0fe9a4709e716d015c678bdd8bcb897876c267ec48441e2383aebb26b80457d2238f79546537af3409aa698544dc0043ff2c921f18126662' |