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authorRhinoceros2021-12-22 10:11:50 +1100
committerRhinoceros2021-12-22 10:11:50 +1100
commiteb2eab1173109aa510b87799aa9e9ccacb5ba354 (patch)
tree3a532b775e27a3c83ca9bd46703ddf3c147e54ad
parent6337fc335fd299d89f185a7480b9716924376d77 (diff)
downloadaur-eb2eab1173109aa510b87799aa9e9ccacb5ba354.tar.gz
Update to 2.11.9-1
* Upstream changelog: This release includes the following updates: The Log4j dependency has been removed from IGV and replaced with java.util.logging. Note, if you have customized Log4j settings in previous versions of IGV, these customized settings are now ignored. Open an issue in the IGV GitHub repo if you need customized log settings. Loading of BAM files has been optimized to alleviate bottlenecks affecting large 3rd gen seqencing files and very deep coverage files. The function to Move the IGV Directory, which is invoked from View > Preferences > Advanced, now moves the IGV directory to the target directory, rather than moving the contents of the IGV directory to the target directory.
-rw-r--r--.SRCINFO8
-rw-r--r--PKGBUILD4
2 files changed, 6 insertions, 6 deletions
diff --git a/.SRCINFO b/.SRCINFO
index addaa066362b..9356d68e231d 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = igv
pkgdesc = High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute.
- pkgver = 2.11.7
+ pkgver = 2.11.9
pkgrel = 1
url = http://www.broadinstitute.org/software/igv/home
arch = any
@@ -8,14 +8,14 @@ pkgbase = igv
depends = jre11-openjdk
depends = archlinux-java-run
depends = sh
- source = https://data.broadinstitute.org/igv/projects/downloads/2.11/IGV_Linux_2.11.7_WithJava.zip
+ source = https://data.broadinstitute.org/igv/projects/downloads/2.11/IGV_Linux_2.11.9_WithJava.zip
source = igv.sh
source = igv_hidpi.sh
source = igv.desktop
source = igv_hidpi.desktop
source = igv-license-2020.txt::https://raw.githubusercontent.com/igvteam/igv/master/license.txt
- source = https://raw.githubusercontent.com/igvteam/igv/v2.11.7/test/web/IGV_64.png
- sha512sums = c89685494f31ec0eb61ecfa60938805aa4c8e2ce43e2623981f95c753430ae82a9ff440f8618701e4c8ba1fcf9a317adf75ae0f5db306237bedd3a146a2f981c
+ source = https://raw.githubusercontent.com/igvteam/igv/v2.11.9/test/web/IGV_64.png
+ sha512sums = 794d44192ebf2687bbbb7e171d40570988b07980ebd72c26f72683e98bd626584fc909ff7800134b909a9e99fce10b27908befbcc90b528fb5d7e94c59ee68ab
sha512sums = 70de493d5188d6eedbd0bf7c74d41ce4829efab75e3a79b56f998326c209d0184f5d3624d6b85d01ad93f0462e785c314322ef4a9260ead6d747f1791ecbe649
sha512sums = 60c9c8c6f66259a4edafd1d58d1f1ebcda4450f7620d4c0fc987d5875c2fd531bc2a3159fcdb77975bf07002036e3544f4d301a31d1085ab24d576eea1f8adcb
sha512sums = c6bd4fc8bb7e43ee0fe9a4709e716d015c678bdd8bcb897876c267ec48441e2383aebb26b80457d2238f79546537af3409aa698544dc0043ff2c921f18126662
diff --git a/PKGBUILD b/PKGBUILD
index 3aa221ce74f0..a889ee21fc45 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -4,7 +4,7 @@
# Co-maintainer: Rhinoceros <https://aur.archlinux.org/account/rhinoceros>
pkgname=igv
-pkgver=2.11.7
+pkgver=2.11.9
minor_pkgver=$(<<<$pkgver sed -E 's/^([0-9]+\.[0-9]+)\..*/\1/')
_pkgver=${pkgver//_/-} # currently not needed
pkgrel=1
@@ -21,7 +21,7 @@ source=("https://data.broadinstitute.org/igv/projects/downloads/${minor_pkgver}/
"igv_hidpi.desktop"
"${pkgname}-license-2020.txt::https://raw.githubusercontent.com/igvteam/igv/master/license.txt"
"https://raw.githubusercontent.com/igvteam/igv/v${pkgver}/test/web/IGV_64.png")
-sha512sums=('c89685494f31ec0eb61ecfa60938805aa4c8e2ce43e2623981f95c753430ae82a9ff440f8618701e4c8ba1fcf9a317adf75ae0f5db306237bedd3a146a2f981c'
+sha512sums=('794d44192ebf2687bbbb7e171d40570988b07980ebd72c26f72683e98bd626584fc909ff7800134b909a9e99fce10b27908befbcc90b528fb5d7e94c59ee68ab'
'70de493d5188d6eedbd0bf7c74d41ce4829efab75e3a79b56f998326c209d0184f5d3624d6b85d01ad93f0462e785c314322ef4a9260ead6d747f1791ecbe649'
'60c9c8c6f66259a4edafd1d58d1f1ebcda4450f7620d4c0fc987d5875c2fd531bc2a3159fcdb77975bf07002036e3544f4d301a31d1085ab24d576eea1f8adcb'
'c6bd4fc8bb7e43ee0fe9a4709e716d015c678bdd8bcb897876c267ec48441e2383aebb26b80457d2238f79546537af3409aa698544dc0043ff2c921f18126662'