diff options
| author | clintval | 2017-12-19 01:16:57 -0500 |
|---|---|---|
| committer | clintval | 2017-12-19 01:16:57 -0500 |
| commit | c9133dad49de1480a128f9acd1342787ca4e848a (patch) | |
| tree | e26f3140959bf89947dc7eb3673dc07f261fedfb | |
| download | aur-c9133dad49de1480a128f9acd1342787ca4e848a.tar.gz | |
First commit with PKGBUILD, .SRCINFO, and igvtools
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | PKGBUILD | 24 | ||||
| -rw-r--r-- | igvtools | 2 |
3 files changed, 43 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..9479c7b9249a --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = igvtools + pkgdesc = IGV utilities for preprocessing data files + pkgver = 2.3.98 + pkgrel = 1 + url = https://software.broadinstitute.org/software/igv + arch = any + license = GPL2 + depends = java-runtime-openjdk>=6 + provides = igvtools + conflicts = igvtools + source = http://data.broadinstitute.org/igv/projects/downloads/2.3/igvtools_2.3.98.zip + source = igvtools + md5sums = 17ed12a213cd9cdaeb2f2a5c56d84bc4 + md5sums = 17d307c9586921bccef9f7cb22b3e7ba + +pkgname = igvtools + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..a5e4c4a23388 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,24 @@ +# Maintainer: Clint Valentine <valentine.clint@gmail.com> + +pkgname=igvtools +pkgver=2.3.98 +pkgrel=1 +pkgdesc="IGV utilities for preprocessing data files" +arch=('any') +url="https://software.broadinstitute.org/software/igv" +license=('GPL2') +depends=('java-runtime-openjdk>=6') +provides=('igvtools') +conflicts=('igvtools') +source=( + "http://data.broadinstitute.org/igv/projects/downloads/${pkgver%.*}/${pkgname}_${pkgver}.zip" + "igvtools") +md5sums=( + '17ed12a213cd9cdaeb2f2a5c56d84bc4' + '17d307c9586921bccef9f7cb22b3e7ba') + +package() { + install -Dm775 "${srcdir}/${pkgname}" "${pkgdir}/usr/bin/${pkgname}" + install -Dm664 "${srcdir}/IGVTools/${pkgname}.jar" "${pkgdir}/usr/share/java/igv/${pkgname}.jar" + install -Dm644 "${srcdir}/IGVTools/igvtools_readme.txt" "${pkgdir}/usr/share/docs/${pkgname}-${pkgver%.*}/README.txt" +} diff --git a/igvtools b/igvtools new file mode 100644 index 000000000000..7c1007886860 --- /dev/null +++ b/igvtools @@ -0,0 +1,2 @@ +#!/bin/sh +java -Djava.awt.headless=true -Xmx1500m -jar /usr/share/java/igv/igvtools.jar "${@}" |