Initial commit

2 files changed, 77 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..6dcb6c993a96
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,23 @@
+pkgbase = infrared-git
+	pkgdesc = Library for uniform sampling of RNA sequences given structural and sequence constraints.
+	pkgver = 0.3.r7.gec411b9
+	pkgrel = 1
+	url = https://github.com/s-will/Infrared/
+	arch = x86_64
+	groups = viennarna-package
+	license = GPL3
+	makedepends = git
+	makedepends = boost
+	makedepends = doxygen
+	depends = htd
+	depends = boost-libs
+	depends = python-rna
+	provides = libinfrared.so
+	provides = libhtdwrap.so
+	provides = redprint.py
+	conflicts = infrared
+	source = Infrared::git+https://github.com/s-will/Infrared/#branch=master
+	md5sums = SKIP
+
+pkgname = infrared-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..3216528c92ef
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Vincent von Schelm <aur at vncnt dot eu>
+
+pkgname=('infrared-git')
+pkgName=('Infrared-git')
+pkgver=0.3.r7.gec411b9
+pkgrel=1
+pkgdesc="Library for uniform sampling of RNA sequences given structural and sequence constraints."
+arch=('x86_64')
+url="https://github.com/s-will/Infrared/"
+license=('GPL3')
+groups=('viennarna-package')
+depends=('htd'
+         'boost-libs'
+         'python-rna')
+makedepends=('git'
+             'boost'
+             'doxygen')
+provides=('libinfrared.so' 'libhtdwrap.so' 'redprint.py')
+conflicts=('infrared')
+source=("Infrared::git+${url}#branch=master")
+md5sums=('SKIP')
+
+pkgver() {
+  cd "${pkgName%-git}"
+  git describe --long --tags | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g'
+}
+
+prepare() {
+	cd "${pkgName%-git}"
+	#sed -ie '/PYTHON_VERSION/s/3.6/3.8/g' configure.ac
+	autoreconf -i
+}
+
+build() {
+  cd "${pkgName%-git}"
+	./configure --with-htd=/usr --with-boost-python --prefix=/usr
+	make
+	make doxygen-doc
+}
+
+check() {
+  cd "${pkgName%-git}"
+	
+}
+
+package() {
+	cd "${pkgName%-git}"
+	make DESTDIR="$pkgdir" install
+	
+	# symlink to python site-packages
+	local site_packages=$(python -c "import site; print(site.getsitepackages()[0])")
+	mkdir -p "${pkgdir}${site_packages}" 
+	ln -st "${pkgdir}${site_packages}" /usr/lib/libhtdwrap.so /usr/lib/libinfrared.so
+}