new

4 files changed, 69 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..a0ffbb15708d
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = jane
+	pkgdesc = software tool for the cophylogeny reconstruction problem
+	pkgver = 4
+	pkgrel = 1
+	url = http://www.beast2.org/
+	arch = x86_64
+	license = Harvey Mudd College source code & Apache License
+	depends = jre-openjdk-headless
+	depends = jre-openjdk
+	depends = jdk-openjdk
+	depends = openjdk-doc
+	depends = openjdk-src
+	source = https://www.cs.hmc.edu/~hadas/jane/downloads/linux.tar.gz
+	source = jane.desktop
+	source = jane.png
+	sha256sums = 7cd00209eb7fcf65124b768e9d502065c45ced1800a8d691911daeb4d1664333
+	sha256sums = 7e17b84cf5f68a75b76aa6487f287c829f6d46c4e9120ce1b87de9566ac3ae6d
+	sha256sums = cf2275b7de1beb05e3be078409f596d0f88735888ee6e8298977ee6a1427a6c1
+
+pkgname = jane
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..754b2efb4a54
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,29 @@
+# Maintainer: Malacology <guoyizhang at malacology dot com>
+# Contributor: Malacology <guoyizhang at malacology dot com>
+
+pkgname=jane
+pkgver=4
+pkgrel=1
+pkgdesc="software tool for the cophylogeny reconstruction problem"
+arch=('x86_64')
+url="http://www.beast2.org/"
+license=('Harvey Mudd College source code & Apache License')
+source=("https://www.cs.hmc.edu/~hadas/jane/downloads/linux.tar.gz" "jane.desktop" "jane.png")
+sha256sums=('7cd00209eb7fcf65124b768e9d502065c45ced1800a8d691911daeb4d1664333'
+            '7e17b84cf5f68a75b76aa6487f287c829f6d46c4e9120ce1b87de9566ac3ae6d'
+            'cf2275b7de1beb05e3be078409f596d0f88735888ee6e8298977ee6a1427a6c1')
+depends=(
+	'jre-openjdk-headless'
+	'jre-openjdk'
+	'jdk-openjdk'
+	'openjdk-doc'
+	'openjdk-src'
+)
+package() {
+    install -dm755 "$pkgdir"/usr/{bin,share/{jane,icons,applications}}
+    install -m 755 ${srcdir}/*.desktop ${pkgdir}/usr/share/applications
+    install -m 755 ${srcdir}/*.png ${pkgdir}/usr/share/icons
+    mv "$srcdir"/* "$pkgdir"/usr/share/jane
+    ln -s /usr/share/jane/lib/jane.jar ${pkgdir}/usr/bin/jane
+    
+}
diff --git a/jane.desktop b/jane.desktop
new file mode 100644
index 000000000000..ea022a68ce6b
--- /dev/null
+++ b/jane.desktop
@@ -0,0 +1,19 @@
+[Desktop Entry]
+Categories=
+Encoding=UTF-8
+Exec=java -jar /usr/share/jane/lib/jane.jar
+GenericName=
+GenericName[zh]=
+Icon=/usr/share/icons/jane.png
+MimeType=
+Name=Jane
+Name[zh]=Jane
+ServiceTypes=
+SwallowExec=
+SwallowTitle=
+Terminal=false
+TerminalOptions=
+Type=Application
+X-KDE-SubstituteUID=false
+X-KDE-Username=root
+
diff --git a/jane.png b/jane.png
new file mode 100644
index 000000000000..df8b15299dac
--- /dev/null
+++ b/jane.png