Initial import

2 files changed, 53 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..fe67fde2de4b
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,14 @@
+pkgbase = mafft
+	pkgdesc = Multiple alignment program for amino acid or nucleotide sequences
+	pkgver = 7.221
+	pkgrel = 1
+	url = http://mafft.cbrc.jp/alignment/software
+	arch = i686
+	arch = x86_64
+	license = custom
+	depends = ruby
+	source = http://mafft.cbrc.jp/alignment/software/mafft-7.221-with-extensions-src.tgz
+	md5sums = b1aad911e51024d631722a2e061ba215
+
+pkgname = mafft
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..189416488e0c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Steffen Weber <-boenki-gmx-de->
+# Contributor: Mick Elliot <micke at sfu dot ca>
+
+pkgname=mafft
+pkgver=7.221
+pkgrel=1
+pkgdesc="Multiple alignment program for amino acid or nucleotide sequences"
+arch=('i686' 'x86_64')
+url="http://mafft.cbrc.jp/alignment/software"
+license=('custom')
+depends=('ruby')
+source=($url/$pkgname-$pkgver-with-extensions-src.tgz)
+md5sums=('b1aad911e51024d631722a2e061ba215')
+
+build() {
+  cd $pkgname-$pkgver-with-extensions/core
+  make clean
+  make -e PREFIX=/usr LIBDIR=/usr/lib/mafft
+
+  cd ../extensions
+  make clean
+  make -e PREFIX=/usr LIBDIR=/usr/lib/mafft
+}
+
+package() {
+  cd $pkgname-$pkgver-with-extensions/core
+  make PREFIX=$pkgdir/usr LIBDIR=$pkgdir/usr/lib/mafft install
+
+  cd ../extensions
+  make PREFIX=$pkgdir/usr LIBDIR=$pkgdir/usr/lib/mafft install
+
+  install -d $pkgdir/usr/share/licenses/mafft/
+  install -m644 ../license* $pkgdir/usr/share/licenses/mafft/
+
+  rm $pkgdir/usr/lib/mafft/*.1
+
+  ln -sf /usr/lib/mafft/mafft-profile $pkgdir/usr/bin
+  ln -sf /usr/lib/mafft/mafft-distance $pkgdir/usr/bin
+}