init

2 files changed, 56 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3c56956e3bc3
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,17 @@
+pkgbase = mcscanx
+	pkgdesc = Multiple Collinearity Scan toolkit X version https://doi.org/10.1093/nar/gkr1293
+	pkgver = r53.b1ca533
+	pkgrel = 4
+	url = https://github.com/wyp1125/MCScanX
+	arch = x86_64
+	license = BSD
+	makedepends = make
+	makedepends = git
+	makedepends = java-environment=11
+	depends = java-runtime=11
+	depends = glibc
+	optdepends = perl
+	source = git+https://github.com/wyp1125/MCScanX.git
+	sha256sums = SKIP
+
+pkgname = mcscanx
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..25f014972079
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Guoyi Zhang <guoyi zhang at malacology dot net>
+
+pkgname=mcscanx
+_pkgname=MCScanX
+pkgver=r53.b1ca533
+pkgrel=4
+pkgdesc="Multiple Collinearity Scan toolkit X version https://doi.org/10.1093/nar/gkr1293"
+arch=('x86_64')
+url="https://github.com/wyp1125/MCScanX"
+license=('BSD')
+depends=('java-runtime=11' 'glibc')
+makedepends=('make' 'git' 'java-environment=11')
+optdepends=('perl')
+source=(git+https://github.com/wyp1125/MCScanX.git)
+sha256sums=('SKIP')
+pkgver(){
+  cd $_pkgname
+  printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
+}
+
+build() {
+  cd "$_pkgname"
+  make
+}
+
+package() {
+  cd "$_pkgname"
+  for bin in "duplicate_gene_classifier" "MCScanX" "MCScanX_h"
+do
+	install -D -m 755 $bin $pkgdir/usr/bin/$bin
+done
+  cd downstream_analyses
+  for downstream in *.java *.pl detect_collinear_tandem_arrays dissect_multiple_alignment
+do
+	install -D -m 755 $downstream $pkgdir/usr/share/$pkgname/$downstream
+done
+
+}
+