Initial import

3 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..90bf74f6240a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,20 @@
+pkgbase = meme
+	pkgdesc = The MEME suite provides tools for discovering and using protein and DNA sequence motifs
+	pkgver = 4.10.1_2
+	pkgrel = 2
+	url = http://meme-suite.org/
+	arch = i686
+	arch = x86_64
+	license = custom
+	depends = perl-html-template
+	depends = tcsh
+	depends = python2
+	depends = perl-xml-parser
+	depends = openmpi
+	source = http://meme-suite.org/meme-software/4.10.1/meme_4.10.1_2.tar.gz
+	source = python27.patch
+	sha1sums = 64d37d5cf86b1595f07425b8d2fcc9346e84abbc
+	sha1sums = 737b1ef7cb277412c2fff692a2e9b2a261e1b532
+
+pkgname = meme
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..a3929bea0643
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+#Maintainer: allencch <allencch at hotmail dot com>
+#Contributor: Charles E. Vejnar
+pkgname=meme
+pkgver=4.10.1_2
+pkgrel=2
+pkgdesc="The MEME suite provides tools for discovering and using protein and DNA sequence motifs"
+arch=("i686" "x86_64")
+url="http://meme-suite.org/"
+license=("custom")
+depends=(perl-html-template tcsh python2 perl-xml-parser openmpi)
+source=("http://meme-suite.org/meme-software/4.10.1/${pkgname}_${pkgver}.tar.gz"
+        "python27.patch")
+sha1sums=("64d37d5cf86b1595f07425b8d2fcc9346e84abbc"
+          "737b1ef7cb277412c2fff692a2e9b2a261e1b532")
+
+prepare() {
+    cd $srcdir/${pkgname}_${pkgver%_*}
+
+    patch -p1 -i "${srcdir}/python27.patch"
+}
+
+build() {
+    cd $srcdir/${pkgname}_${pkgver%_*}
+
+    LDFLAGS="-Wl,--allow-multiple-definition" ./configure --prefix=/usr --program-prefix="meme-" --docdir='${prefix}'/usr/share/doc/meme --sysconfdir='${prefix}'/../etc/meme --with-python=/usr/bin/python2.7
+    
+    make
+}
+
+package() {
+    cd "${srcdir}/${pkgname}_${pkgver%_*}"
+
+    make prefix="${pkgdir}/usr" install
+
+    # Move Python modules to a more standard location
+    install -dm755 ${pkgdir}/usr/lib/python2.7/site-packages
+    for fname in $(ls -1 ${pkgdir}/usr/lib/python2.7/); do
+        if [[ $fname = *.py ]]; then
+            mv ${pkgdir}/usr/lib/python2.7/$fname ${pkgdir}/usr/lib/python2.7/site-packages/${fname#meme-}
+        fi
+    done
+
+    # Rename Perl modules
+    for fname in $(ls -1 ${pkgdir}/usr/lib/perl/); do
+        if [[ $fname = meme-*.pm ]]; then
+            mv ${pkgdir}/usr/lib/perl/$fname ${pkgdir}/usr/lib/perl/${fname#meme-}
+        fi
+    done
+    
+    sed -i -e "s/\(PROG => \)/\1'meme-'./g" "${pkgdir}/usr/bin/meme-meme-chip"
+}
diff --git a/python27.patch b/python27.patch
new file mode 100644
index 000000000000..2213a40543a2
--- /dev/null
+++ b/python27.patch
@@ -0,0 +1,11 @@
+--- a/scripts/Makefile.in
++++ b/scripts/Makefile.in
+@@ -548,7 +548,7 @@
+   hypergeometric.py \
+   sequence.py
+ 
+-pythonlibdir = $(libdir)/python
++pythonlibdir = $(libdir)/python2.7
+ pythonlib_SCRIPTS = \
+   $(BUILT_PYTHON_LIB) \
+   $(NORMAL_PYTHON_LIB)
\ No newline at end of file