Initial commit

2 files changed, 68 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..cd8bf2c4e94a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,20 @@
+pkgbase = minia-git
+	pkgdesc = short-read assembler based on a de Bruijn graph
+	pkgver = 3.2.1.r12.g5b131b9
+	pkgrel = 1
+	url = https://github.com/GATB/bcalm
+	arch = i686
+	arch = x86_64
+	license = AGPL3
+	makedepends = cmake
+	depends = gcc-libs
+	depends = zlib
+	provides = minia
+	conflicts = minia
+	source = git+https://github.com/GATB/minia.git
+	source = git+https://github.com/GATB/gatb-core.git
+	md5sums = SKIP
+	md5sums = SKIP
+
+pkgname = minia-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0ac24408e5e2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Maël Kerbiriou <m431.kerbiriou@gmail.com>
+
+pkgname=minia-git
+_pkgname=minia
+pkgver=3.2.1.r12.g5b131b9
+pkgrel=1
+pkgdesc="short-read assembler based on a de Bruijn graph"
+arch=('i686' 'x86_64')
+url="https://github.com/GATB/bcalm"
+license=('AGPL3')
+conflicts=("$_pkgname")
+provides=("$_pkgname")
+depends=('gcc-libs' 'zlib')
+makedepends=('cmake')
+source=("git+https://github.com/GATB/minia.git"
+        "git+https://github.com/GATB/gatb-core.git")
+md5sums=('SKIP' 'SKIP')
+
+prepare() {
+  cd "$_pkgname"
+  git submodule init
+  git config submodule.thirdparty/gatb-core.url "$srcdir/gatb-core"
+  git submodule update
+}
+
+pkgver() {
+  cd "$_pkgname"
+  git describe --long | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g'
+}
+
+build() {
+  builddir="$srcdir/$_pkgname/build"
+  mkdir -p "$builddir"
+  cd "$builddir"
+  cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INTERPROCEDURAL_OPTIMIZATION=True
+  make
+}
+
+check() {
+    cd "$srcdir/$_pkgname/test"
+    ./simple_test.sh
+}
+
+package() {
+  cd "$srcdir/$_pkgname"
+  install -Dm755 build/bin/minia "$pkgdir/usr/bin/minia"
+  install -Dm755 build/bin/merci "$pkgdir/usr/bin/merci"
+}