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author | Joshua Hardy | 2017-03-12 16:11:18 +1100 |
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committer | Joshua Hardy | 2017-03-12 16:11:18 +1100 |
commit | 6118ca8025cd894135b32e6d2b17af976709f6d7 (patch) | |
tree | fe97eb8feec19aa8f43f3e3835929bd0bb0d7c14 | |
download | aur-6118ca8025cd894135b32e6d2b17af976709f6d7.tar.gz |
first upload
-rw-r--r-- | .SRCINFO | 14 | ||||
-rw-r--r-- | PKGBUILD | 22 |
2 files changed, 36 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..7b4d3c2c6a43 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,14 @@ +pkgbase = motioncor2 + pkgdesc = A multi-GPU program that corrects beam-induced sample motion on dose fractionated movie stacks + pkgver = 01302017 + pkgrel = 1 + url = http://msg.ucsf.edu/em/software/motioncor2.html + arch = x86_64 + license = CCPL:cc-by-nc-nd-3.0 + depends = cuda + depends = nvidia-utils + source = http://msg.ucsf.edu/MotionCor2/MotionCor2-01-30-2017.tar.gz + md5sums = aec2f2653ba948e6d9a91a851171ce27 + +pkgname = motioncor2 + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..255fc1179456 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,22 @@ +# Maintainer: Joshua Hardy joshinsilico@gmail.com +pkgname=motioncor2 +pkgver=01302017 +pkgrel=1 +pkgdesc="A multi-GPU program that corrects beam-induced sample motion on dose fractionated movie stacks" +arch=(x86_64) +url="http://msg.ucsf.edu/em/software/motioncor2.html" +license=('CCPL:cc-by-nc-nd-3.0') +depends=('cuda' 'nvidia-utils') +makedepends=() +optdepends=() +source=("http://msg.ucsf.edu/MotionCor2/MotionCor2-01-30-2017.tar.gz") +md5sums=('aec2f2653ba948e6d9a91a851171ce27') +build() { + cd "${srcdir}"/ + execstack -c MotionCor2-??-??-???? + echo "MotionCor2 was designed by Shawn Zheng@University of California and is free for academic use. Cite publication: Shawn Q. Zheng, Eugene Palovcak, Jean-Paul Armache, Yifan Cheng and David A. Agard (2016) Anisotropic Correction of Beam-induced Motion for Improved Single-particle Electron Cryo-microscopy, Nature Methods, submitted. BioArxiv: http://biorxiv.org/content/early/2016/07/04/061960" +} +package() { + install -d "${pkgdir}"/usr "${pkgdir}"/usr/bin + install -D -m755 "${srcdir}"/MotionCor2-??-??-???? "${pkgdir}"/usr/bin/MotionCor2 +} |