Patch for new mvn

3 files changed, 23 insertions, 2 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 419226516388..165002b22fa4 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,7 +1,7 @@
 pkgbase = msgfplus
 	pkgdesc = MS/MS database search tool
 	pkgver = 2021.03.22
-	pkgrel = 1
+	pkgrel = 2
 	url = https://github.com/MSGFPlus/msgfplus
 	arch = any
 	license = custom
@@ -11,11 +11,13 @@ pkgbase = msgfplus
 	source = msgf+
 	source = mzid2tsv
 	source = scoringParamGen
+	source = pom.patch
 	source = https://raw.githubusercontent.com/sangtaekim/msgfplus/master/LICENSE.txt
 	md5sums = 6dcc5986255536361665ed9a65f712ab
 	md5sums = c43c6581b373266171c3930c3718eb9c
 	md5sums = c860b9c30b74dae43de2d3933a405ac1
 	md5sums = 315d84069d6333a83599aa93b782eb5c
+	md5sums = f6bd212470d26a69c8998fef9ad73703
 	md5sums = 88b22e0922010401ea88bcf03e3bb5d2
 
 pkgname = msgfplus
diff --git a/PKGBUILD b/PKGBUILD
index 78529d11a5b4..1f2085a6ee2c 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,7 +1,7 @@
 # Maintainer: Lev Levitsky <levlev@mail.ru>
 pkgname=msgfplus
 pkgver=2021.03.22
-pkgrel=1
+pkgrel=2
 pkgdesc="MS/MS database search tool"
 arch=('any')
 url="https://github.com/MSGFPlus/msgfplus"
@@ -12,13 +12,20 @@ source=("https://github.com/MSGFPlus/msgfplus/archive/refs/tags/v${pkgver}.zip"
 		"msgf+"
 		"mzid2tsv"
         "scoringParamGen"
+        "pom.patch"
         "https://raw.githubusercontent.com/sangtaekim/msgfplus/master/LICENSE.txt")
 md5sums=('6dcc5986255536361665ed9a65f712ab'
          'c43c6581b373266171c3930c3718eb9c'
          'c860b9c30b74dae43de2d3933a405ac1'
          '315d84069d6333a83599aa93b782eb5c'
+         'f6bd212470d26a69c8998fef9ad73703'
          '88b22e0922010401ea88bcf03e3bb5d2')
 
+prepare() {
+    cd "${srcdir}/${pkgname}-${pkgver}"
+    patch -p1 < ../pom.patch
+}
+
 build() {
     cd "${srcdir}/${pkgname}-${pkgver}"
     mvn package
diff --git a/pom.patch b/pom.patch
new file mode 100644
index 000000000000..f424bda78efa
--- /dev/null
+++ b/pom.patch
@@ -0,0 +1,12 @@
+--- a/pom.xml	2021-05-14 03:10:26.739965868 +0300
++++ b/pom.xml	2021-05-14 03:10:41.752964009 +0300
+@@ -244,7 +244,7 @@
+         <repository>

+             <id>nexus-ebi-release-repo</id>

+             <name>The EBI Maven 2 Nexus release repository</name>

+-            <url>http://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-repo/</url>

++            <url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-repo/</url>

+         </repository>

+         <repository>

+             <id>internal-repo</id>

+