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| author | Lev Levitsky | 2020-03-02 23:48:00 +0300 |
|---|---|---|
| committer | Lev Levitsky | 2020-03-02 23:48:00 +0300 |
| commit | 75044b7bce24a7014c9907994eee3628f03341af (patch) | |
| tree | 8474ba7d43a0a4175afdd9220df9c2ea9d65769c | |
| parent | 37760c490a3c2eef23eb5dd4c578e0d76f2f22d3 (diff) | |
| download | aur-75044b7bce24a7014c9907994eee3628f03341af.tar.gz | |
Add scoringParamGen
| -rw-r--r-- | .SRCINFO | 4 | ||||
| -rw-r--r-- | PKGBUILD | 5 | ||||
| -rw-r--r-- | scoringParamGen | 2 |
3 files changed, 9 insertions, 2 deletions
@@ -1,7 +1,7 @@ pkgbase = msgfplus pkgdesc = MS/MS database search tool pkgver = 2020.01.16 - pkgrel = 1 + pkgrel = 2 url = https://github.com/MSGFPlus/msgfplus arch = any license = custom @@ -9,10 +9,12 @@ pkgbase = msgfplus source = https://github.com/MSGFPlus/msgfplus/releases/download/v2020.01.16/MSGFPlus_v20200115.zip source = msgf+ source = mzid2tsv + source = scoringParamGen source = https://raw.githubusercontent.com/sangtaekim/msgfplus/master/LICENSE.txt md5sums = 1e79ed1f10409ad1fd506a6ccd5263d1 md5sums = c43c6581b373266171c3930c3718eb9c md5sums = c860b9c30b74dae43de2d3933a405ac1 + md5sums = 315d84069d6333a83599aa93b782eb5c md5sums = 88b22e0922010401ea88bcf03e3bb5d2 pkgname = msgfplus @@ -1,7 +1,7 @@ # Maintainer: Lev Levitsky <levlev@mail.ru> pkgname=msgfplus pkgver=2020.01.16 -pkgrel=1 +pkgrel=2 pkgdesc="MS/MS database search tool" arch=('any') url="https://github.com/MSGFPlus/msgfplus" @@ -10,10 +10,12 @@ depends=('java-environment') source=("https://github.com/MSGFPlus/msgfplus/releases/download/v2020.01.16/MSGFPlus_v20200115.zip" "msgf+" "mzid2tsv" + "scoringParamGen" "https://raw.githubusercontent.com/sangtaekim/msgfplus/master/LICENSE.txt") md5sums=('1e79ed1f10409ad1fd506a6ccd5263d1' 'c43c6581b373266171c3930c3718eb9c' 'c860b9c30b74dae43de2d3933a405ac1' + '315d84069d6333a83599aa93b782eb5c' '88b22e0922010401ea88bcf03e3bb5d2') package() { @@ -23,5 +25,6 @@ package() { cp -r Docs/Examples "${pkgdir}/usr/share/${pkgname}/" install -D msgf+ "${pkgdir}/usr/bin/msgf+" install -D mzid2tsv "${pkgdir}/usr/bin/mzid2tsv" + install -D scoringParamGen "${pkgdir}/usr/bin/scoringParamGen" install -D LICENSE.txt -t "${pkgdir}/usr/share/licenses/msgfplus/" } diff --git a/scoringParamGen b/scoringParamGen new file mode 100644 index 000000000000..30d30779253b --- /dev/null +++ b/scoringParamGen @@ -0,0 +1,2 @@ +#!/bin/sh +exec /usr/bin/java -cp '/usr/share/java/msgfplus/MSGFPlus.jar' "edu.ucsd.msjava.ui.ScoringParamGen" "$@" |