update to 4.0.0rc1

2 files changed, 24 insertions, 53 deletions

diff --git a/.SRCINFO b/.SRCINFO
index 47e2d7ec224b..436f0737f0ef 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,18 +1,16 @@
 pkgbase = mummer
 	pkgdesc = MUMmer is a program for rapidly aligning large genomes
-	pkgver = 3.23
-	pkgrel = 2
+	pkgver = 4.0.0rc1
+	pkgrel = 1
 	url = http://mummer.sourceforge.net
 	arch = i686
 	arch = x86_64
 	license = PerlArtistic
+	makedepends = autoconf
+	makedepends = yaggo
 	depends = perl
-	optdepends = gnuplot: for alignment visualization
-	optdepends = xfig: for alignment visualization
-	optdepends = transsfig: for alignment visualization
-	optdepends = tcsh: for running some optional scripts
-	source = http://downloads.sourceforge.net/project/mummer/mummer/3.23/MUMmer3.23.tar.gz
-	md5sums = f2422b3d2638dba4baedb71b1acdffa2
+	depends = gnuplot
+	source = mummer-4.0.0rc1.tar.gz::https://github.com/mummer4/mummer/archive/refs/tags/v4.0.0rc1.tar.gz
+	sha512sums = c22c7efbb0374b9b41b3f8788a0360e0bc11cd0a7eda4c88907ebcc75e8a51240fc338d33dd7d6800f2d550b359d13bfa79b187379be774e28c73864c6904c26
 
 pkgname = mummer
-
diff --git a/PKGBUILD b/PKGBUILD
index 2a970f642945..5aab92af56d8 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -4,58 +4,31 @@
 # Note: this software is difficult to install.
 
 pkgname=mummer
-pkgver=3.23
-pkgrel=2
+pkgver=4.0.0rc1
+pkgrel=1
 pkgdesc="MUMmer is a program for rapidly aligning large genomes"
 arch=('i686' 'x86_64')
 url="http://mummer.sourceforge.net"
 license=('PerlArtistic')
-depends=('perl')
-optdepends=('gnuplot: for alignment visualization'
-                'xfig: for alignment visualization'
-                'transsfig: for alignment visualization'
-		'tcsh: for running some optional scripts')
-
-source=("http://downloads.sourceforge.net/project/mummer/mummer/${pkgver}/MUMmer${pkgver}.tar.gz")
+depends=('perl' 'gnuplot')
+makedepends=('autoconf' 'yaggo') #'python' 'ruby' 'swig'
+source=("${pkgname}-${pkgver}.tar.gz::https://github.com/mummer4/mummer/archive/refs/tags/v4.0.0rc1.tar.gz")
 
 build() {
-  cd MUMmer${pkgver}
+  cd ${pkgname}-${pkgver}
+  autoupdate -f
+  autoreconf -fi 
+  export CXXFLAGS="-Wno-error"
+  ./configure --prefix=/usr/ --program-prefix=${pkgname}- \
+    --libexecdir=/usr/lib/ 
+#   --enable-all-binding
   make
 }
 
 package() {
-  cd MUMmer${pkgver}
-
-  mkdir -p ${pkgdir}/usr/share/doc/mummer \
-           ${pkgdir}/usr/bin \
-           ${pkgdir}/usr/lib/mummer/{aux_bin,scripts} \
-           ${pkgdir}/usr/share/man/man1
-
-  install -m755 annotate combineMUMs delta-filter dnadiff exact-tandems \
-                gaps mapview mgaps mummer mummerplot nucmer nucmer2xfig \
-                promer repeat-match run-mummer1 run-mummer3 show-aligns \
-                show-coords show-diff show-snps show-tiling \
-                ${pkgdir}/usr/bin
-
-  install -m755 aux_bin/{prenuc,postnuc,prepro,postpro} \
-                ${pkgdir}/usr/lib/mummer/aux_bin
-
-  install -m755 scripts/*.{pl,awk,csh} ${pkgdir}/usr/lib/mummer/scripts
-
-  # The software hard-codes the build directory into some scripts.  Fix this...
-  cp -r README ACKNOWLEDGEMENTS docs/*{.README,.pdf} docs/web \
-                ${pkgdir}/usr/share/doc/mummer
-  install -Dm644 scripts/Foundation.pm ${pkgdir}/usr/lib/perl5/site_perl/Foundation.pm
-  #first replace scripts and aux_bin
-  find ${pkgdir} -type f -exec sed -i -e "s@$PWD/scripts@/usr/lib/mummer/scripts@g" {} \;
-  find ${pkgdir} -type f -exec sed -i -e "s@$PWD/aux_bin@/usr/lib/mummer/aux_bin@g" {} \;
-  # now replace all that's left with /usr/bin
-  find ${pkgdir} -type f -exec sed -i -e "s@$PWD@/usr/bin@g" {} \;
-
-  # Fix conflict with `gd' package
-  mv ${pkgdir}/usr/bin/{,mummer-}annotate
-  sed -i -e 's@\$bindir/annotate@\$bindir/mummer-annotate@' \
-  			${pkgdir}/usr/bin/run-mummer1 \
-			${pkgdir}/usr/lib/mummer/scripts/run-mummer1.csh
+  cd ${pkgname}-${pkgver}
+  make DESTDIR=${pkgdir} install
+  mv ${pkgdir}/usr/include/${pkgname}-${pkgver}/include/* ${pkgdir}/usr/include
+  rm -rf ${pkgdir}/usr/include/${pkgname}-${pkgver}
 }
-md5sums=('f2422b3d2638dba4baedb71b1acdffa2')
+sha512sums=('c22c7efbb0374b9b41b3f8788a0360e0bc11cd0a7eda4c88907ebcc75e8a51240fc338d33dd7d6800f2d550b359d13bfa79b187379be774e28c73864c6904c26')