diff options
| author | Thiago L. A. Miller | 2018-08-31 01:32:28 -0300 |
|---|---|---|
| committer | Thiago L. A. Miller | 2018-09-02 03:25:09 -0300 |
| commit | 26bf544bfb034f81f28c8eb318e581e354fc3725 (patch) | |
| tree | d658dfe6e74b955dc0fb00854ceb40b003e548b9 | |
| download | aur-26bf544bfb034f81f28c8eb318e581e354fc3725.tar.gz | |
First commit - ngmlr-v0.2.7
| -rw-r--r-- | .SRCINFO | 16 | ||||
| -rw-r--r-- | .gitignore | 5 | ||||
| -rw-r--r-- | PKGBUILD | 35 |
3 files changed, 56 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..f24ba7a04c2d --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,16 @@ +pkgbase = ngmlr + pkgdesc = Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes + pkgver = 0.2.7 + pkgrel = 1 + url = https://github.com/philres/ngmlr + arch = x86_64 + license = MIT + makedepends = cmake + depends = gcc-libs + depends = zlib + options = !emptydirs + source = ngmlr-0.2.7.tar.gz::https://github.com/philres/ngmlr/archive/v0.2.7.tar.gz + md5sums = f4eea67dd3e02d278ef586317b478841 + +pkgname = ngmlr + diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..b8ca3f7cce11 --- /dev/null +++ b/.gitignore @@ -0,0 +1,5 @@ +*.tar.gz +*.tar.xz +/pkg/ +/src/ +/build/ diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..b24d4f047389 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,35 @@ +# Maintainer: Thiago L. A. Miller <thiago_leisrael@hotmail.com> +pkgname=ngmlr +pkgver=0.2.7 +pkgrel=1 +pkgdesc="Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes" +arch=('x86_64') +url="https://github.com/philres/$pkgname" +license=('MIT') +depends=('gcc-libs' 'zlib') +makedepends=('cmake') +options=('!emptydirs') +source=("$pkgname-$pkgver.tar.gz"::"https://github.com/philres/$pkgname/archive/v$pkgver.tar.gz") +md5sums=('f4eea67dd3e02d278ef586317b478841') + +build() { + cd "$pkgname-$pkgver" + cmake \ + -DCMAKE_COLOR_MAKEFILE:BOOL='ON' \ + -DCMAKE_INSTALL_PREFIX:PATH='/usr' \ + -Wno-dev \ + . + make +} + +package() { + cd "$pkgname-$pkgver" + make DESTDIR="$pkgdir" install + install -Dpm644 'LICENSE' "$pkgdir/usr/share/licenses/$pkgname/LICENSE" +} + +# Local Variables: +# mode: shell-script +# sh-basic-offset: 2 +# End: +# vim:set ts=2 sw=2 et: |